Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G233700.1 | Wheat | nucleus | 97.76 | 97.76 |
| TraesCS5B01G232200.1 | Wheat | nucleus | 96.13 | 95.94 |
| Zm00001d005871_P002 | Maize | nucleus | 65.78 | 73.24 |
| EER96827 | Sorghum | nucleus | 71.49 | 70.34 |
| Zm00001d020683_P001 | Maize | nucleus | 70.67 | 69.82 |
| Os08t0467100-01 | Rice | nucleus | 70.06 | 64.54 |
| Zm00001d031759_P001 | Maize | nucleus | 68.02 | 64.48 |
| GSMUA_Achr7P18610_001 | Banana | nucleus | 49.49 | 64.29 |
| CDX96046 | Canola | nucleus | 30.14 | 63.52 |
| EES13982 | Sorghum | nucleus | 68.02 | 62.31 |
| GSMUA_Achr5P23130_001 | Banana | nucleus | 46.84 | 60.53 |
| GSMUA_Achr6P02490_001 | Banana | nucleus | 44.6 | 59.19 |
| GSMUA_Achr3P20220_001 | Banana | nucleus | 50.92 | 58.96 |
| Solyc01g005060.2.1 | Tomato | nucleus | 39.92 | 57.82 |
| GSMUA_Achr10P... | Banana | nucleus | 44.2 | 56.66 |
| PGSC0003DMT400079735 | Potato | nucleus, plastid | 50.1 | 56.29 |
| KRH60588 | Soybean | nucleus | 45.62 | 56.0 |
| Solyc06g072360.2.1 | Tomato | nucleus | 44.4 | 55.61 |
| VIT_01s0011g06400.t01 | Wine grape | nucleus | 48.07 | 55.53 |
| KRH41885 | Soybean | nucleus | 42.57 | 55.0 |
| PGSC0003DMT400069306 | Potato | nucleus | 45.21 | 54.01 |
| AT1G25250.3 | Thale cress | nucleus | 42.16 | 53.77 |
| GSMUA_Achr2P21680_001 | Banana | nucleus, plastid | 41.75 | 53.52 |
| Solyc03g098070.2.1 | Tomato | nucleus | 39.51 | 53.3 |
| CDY04204 | Canola | nucleus | 38.9 | 53.2 |
| CDX84974 | Canola | nucleus | 41.34 | 53.0 |
| CDY36123 | Canola | nucleus | 40.73 | 52.91 |
| Bra010981.1-P | Field mustard | nucleus | 40.73 | 52.91 |
| VIT_17s0000g01870.t01 | Wine grape | nucleus | 48.88 | 52.75 |
| CDY60366 | Canola | nucleus | 41.14 | 52.74 |
| CDY51986 | Canola | nucleus | 40.53 | 52.65 |
| Bra024771.1-P | Field mustard | nucleus | 40.94 | 52.48 |
| KRH38986 | Soybean | nucleus | 49.08 | 50.84 |
| KRH48724 | Soybean | nucleus | 49.69 | 50.52 |
| KRH58582 | Soybean | nucleus | 45.21 | 50.45 |
| CDY04203 | Canola | plastid | 39.31 | 50.13 |
| GSMUA_Achr10P... | Banana | nucleus | 40.73 | 50.13 |
| AT1G68130.1 | Thale cress | nucleus | 42.57 | 49.88 |
| Bra004050.1-P | Field mustard | nucleus | 41.96 | 49.88 |
| CDY07400 | Canola | nucleus | 41.96 | 49.88 |
| Bra004283.1-P | Field mustard | nucleus | 41.55 | 49.51 |
| KRH42485 | Soybean | nucleus | 45.21 | 49.12 |
| Bra017432.1-P | Field mustard | nucleus | 43.58 | 48.64 |
| Bra026624.1-P | Field mustard | nucleus | 43.18 | 48.4 |
| TraesCS4D01G232000.1 | Wheat | nucleus, plastid | 40.73 | 48.31 |
| CDY09400 | Canola | nucleus | 42.77 | 47.95 |
| CDY63960 | Canola | nucleus | 43.99 | 47.89 |
| AT2G01940.3 | Thale cress | nucleus | 43.38 | 47.76 |
| CDY17620 | Canola | nucleus | 43.18 | 47.75 |
| Bra024841.1-P | Field mustard | nucleus | 43.18 | 47.75 |
| CDY15800 | Canola | nucleus | 42.97 | 47.74 |
| CDY04102 | Canola | nucleus | 43.58 | 47.66 |
| CDY60095 | Canola | nucleus | 41.96 | 46.61 |
| Solyc05g054030.2.1 | Tomato | nucleus | 34.22 | 44.09 |
| TraesCS6D01G116300.1 | Wheat | nucleus | 23.22 | 27.94 |
| TraesCS3D01G171300.1 | Wheat | nucleus | 25.05 | 25.05 |
| TraesCS3D01G209800.1 | Wheat | nucleus | 23.83 | 24.68 |
| TraesCS3D01G449900.1 | Wheat | nucleus | 25.46 | 24.56 |
| TraesCS4D01G262500.1 | Wheat | nucleus | 26.07 | 24.33 |
| TraesCS2D01G287500.1 | Wheat | nucleus | 22.81 | 24.3 |
| TraesCS3D01G107300.1 | Wheat | nucleus | 23.83 | 23.98 |
| TraesCS4D01G294900.1 | Wheat | nucleus | 22.4 | 22.73 |
| TraesCS5D01G364900.1 | Wheat | nucleus, plastid | 24.64 | 22.12 |
| TraesCS6D01G235800.1 | Wheat | nucleus | 23.83 | 20.24 |
| TraesCS2D01G400300.2 | Wheat | nucleus | 25.25 | 18.73 |
| TraesCS2D01G199300.3 | Wheat | nucleus | 25.05 | 14.56 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G240600.1 | EnsemblPlantsGene:TraesCS5D01G240600 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | ncoils:Coil | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF54 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | MapMan:15.5.15 |
Description
No Description!
Coordinates
chr5D:+:349377009..349379435
Molecular Weight (calculated)
52638.0 Da
IEP (calculated)
8.776
GRAVY (calculated)
-0.573
Length
491 amino acids
Sequence
(BLAST)
(BLAST)
001: MLGSCAPMAG PPTDEETAEP PFGSSLQIAT GSPATKRKRR PAGTPDPDAE VVSLSPRTLL ESDRYVCEIC NQGFQRDQNL QMHRRRHKVP WKLLKREAGE
101: AARKRVFVCP EPSCLHHDPS HALGDLVGIK KHFRRKHSGH RQWACSRCSK AYAVHSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDT CTAGCPQAGP
201: GVAAPACGVA AAPSSQQQAP PPAISLSRSR TASSTSPSSD VVISAVTWPG AAAMRSPNAA AFHRFEQQVP SPRTPQPDGR GGGGHNLELQ LMPPSSSSTG
301: GASAPLGVAP SRYAAPQSPP APISQGDDAA MQLQLSIGFC SGDSRGRRDV GEPSGGTAAR TMQEAREELR QAMAEKAAAD EARAQAKRQG ELAEQELASA
401: KRMRHQAQVE LSRAHALREH AVRQVNATLL QITCFSCRQK FRAVRPSAAM SSEVACSYVT EGGDVEVDNV GETLILDGMR RRQQHATMDT V
101: AARKRVFVCP EPSCLHHDPS HALGDLVGIK KHFRRKHSGH RQWACSRCSK AYAVHSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDT CTAGCPQAGP
201: GVAAPACGVA AAPSSQQQAP PPAISLSRSR TASSTSPSSD VVISAVTWPG AAAMRSPNAA AFHRFEQQVP SPRTPQPDGR GGGGHNLELQ LMPPSSSSTG
301: GASAPLGVAP SRYAAPQSPP APISQGDDAA MQLQLSIGFC SGDSRGRRDV GEPSGGTAAR TMQEAREELR QAMAEKAAAD EARAQAKRQG ELAEQELASA
401: KRMRHQAQVE LSRAHALREH AVRQVNATLL QITCFSCRQK FRAVRPSAAM SSEVACSYVT EGGDVEVDNV GETLILDGMR RRQQHATMDT V
001: MRTDQVMLSN KNTNTCCVVS SSSSDPFLSS SENGVTTTNT STQKRKRRPA GTPDPDAEVV SLSPRTLLES DRYICEICNQ GFQRDQNLQM HRRRHKVPWK
101: LLKRDNNIEV KKRVYVCPEP TCLHHNPCHA LGDLVGIKKH FRRKHSNHKQ WVCERCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDNCS
201: ARRVHREPPR PPQTAVTVPA CSSRTASTVS TPSSETNYGG TVAVTTPQPL EGRPIHQRIS SSILTNSSNN LNLELQLLPL SSNQNPNQEN QQQKVKEPSH
301: HHNHNHDTTN LNLSIAPSSS YQHYNNFDRI KEIMASEQIM KIAMKEKAYA EEAKREAKRQ REIAENEFAN AKKIRQKAQA ELERAKFLKE QSMKKISSTI
401: MQVTCQTCKG QFQAVAVPAA TADETSLVVS YMSSANTDGE LENGF
101: LLKRDNNIEV KKRVYVCPEP TCLHHNPCHA LGDLVGIKKH FRRKHSNHKQ WVCERCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDNCS
201: ARRVHREPPR PPQTAVTVPA CSSRTASTVS TPSSETNYGG TVAVTTPQPL EGRPIHQRIS SSILTNSSNN LNLELQLLPL SSNQNPNQEN QQQKVKEPSH
301: HHNHNHDTTN LNLSIAPSSS YQHYNNFDRI KEIMASEQIM KIAMKEKAYA EEAKREAKRQ REIAENEFAN AKKIRQKAQA ELERAKFLKE QSMKKISSTI
401: MQVTCQTCKG QFQAVAVPAA TADETSLVVS YMSSANTDGE LENGF
Arabidopsis Description
SGR5C2H2-like zinc finger protein [Source:TAIR;Acc:AT2G01940]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.