Factsheet for TraesCS2D01G287500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G306100.1	Wheat	nucleus	98.26	93.79
TraesCS2A01G289500.1	Wheat	nucleus	97.61	93.17
TraesCS4D01G294900.1	Wheat	nucleus	69.41	66.12
Os02t0518500-00	Rice	nucleus	69.85	65.45
KXG30322	Sorghum	nucleus	67.25	65.26
EES05153	Sorghum	nucleus	68.11	63.95
Zm00001d016632_P001	Maize	nucleus	70.28	63.78
VIT_09s0054g01820.t01	Wine grape	nucleus	32.1	37.56
TraesCS6D01G116300.1	Wheat	nucleus	30.59	34.56
TraesCS3D01G107300.1	Wheat	nucleus	35.57	33.61
TraesCS3D01G209800.1	Wheat	nucleus	33.19	32.28
TraesCS3D01G171300.1	Wheat	nucleus	34.27	32.18
TraesCS4D01G262500.1	Wheat	nucleus	35.14	30.8
TraesCS3D01G449900.1	Wheat	nucleus	32.75	29.67
TraesCS5D01G364900.1	Wheat	nucleus, plastid	34.92	29.43
TraesCS6D01G235800.1	Wheat	nucleus	34.49	27.51
TraesCS2D01G400300.2	Wheat	nucleus	36.44	25.38
TraesCS4D01G232000.1	Wheat	nucleus, plastid	22.78	25.36
TraesCS5D01G240600.1	Wheat	nucleus	24.3	22.81
TraesCS2D01G199300.3	Wheat	nucleus	33.62	18.34

Protein Annotations

EnsemblPlants:TraesCS2D01G287500.1	EnsemblPlantsGene:TraesCS2D01G287500	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF48	PFscan:PS50157
ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	MapMan:15.5.15	:

Description

No Description!

Coordinates

chr2D:+:367990703..367993487

Molecular Weight (calculated)

50983.8 Da

IEP (calculated)

7.722

GRAVY (calculated)

-0.682

Length

461 amino acids

Sequence
(BLAST)

001: MSQTSEEESL FNFRQQQKLA LCEAALSKGN PIIHAGKKRR GHPGQPDPDA EVVAFSPKTL LATNRYICEV CHKGFQRDQN LQLHRRCHNL PWKLKQTSGT
101: DAKKKVYICP EATCPHHDAT RALGDLTGIK KHYSRKHGEK KWKCERCSKK YAVQSDWRAH TKICGTKEYR CDCGTIFSRK DSFITHRAFC DALTEDNSRI
201: NQSLAAMVGS LHGQQQCIFP HTIPGADSSP TDAAGNFSGN DQSSDDHLGS LSPYTFIRRS TSLFSNQMIL PHDSGTLADG SEPSSPYMSM SSPYMSATAL
301: LQKAAEMGAK TSEDPTTPLL LKGFPNYFTT KGHIGISSGI LGTPIANSDR KKTAEDNSSY MNSTWTGSCM RPPNAVPWIG LPPFSMGAEN RSSIMVDADH
401: MQQNAHETIF GVRDVGLTQD FLGLGGHGNA EMHDDTYNGE MALSYSNEQQ KSEQDIYSYH Q

Best Arabidopsis Sequence Match ( AT1G55110.1 )
(BLAST)

001: MMMNRDILFH QQQQQQMEEN MSNLTSASGD QASVSSGNRT ETSGSNINQH HQEQCFVPQS SLKRKRNQPG NPDPEAEVMA LSPKTLMATN RFICEVCNKG
101: FQRDQNLQLH KRGHNLPWKL KQRSNKDVVR KKVYVCPEPG CVHHHPSRAL GDLTGIKKHF FRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTKEYKCDC
201: GTLFSRRDSF ITHRAFCDAL AEESARAMPN PIMIQASNSP HHHHHQTQQN IGFSSSSQNI ISNSNLHGPM KQEESQHHYQ NIPPWLISSN PNPNGNNGNL
301: FPPVASSVNT GRSSFPHPSP AMSATALLQK AAQMGSTKST TPEEEERSSR SSYNNLITTT MAAMMTSPPE PGFGFQDYYM MNHQHHGGGE AFNGGFVPGE
401: EKNDVVDDGG GETRDFLGLR SLMSHNEILS FANNLGNCLN TSATEQQQQQ HSHQD

Arabidopsis Description

IDD7Protein indeterminate-domain 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1F5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.