CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG30322	Sorghum	nucleus	86.15	89.05
Zm00001d016632_P001	Maize	nucleus	88.39	85.43
Os02t0518500-00	Rice	nucleus	82.89	82.72
TraesCS4D01G294900.1	Wheat	nucleus	79.02	80.17
TraesCS4A01G008900.1	Wheat	nucleus	78.82	79.79
TraesCS4B01G296200.1	Wheat	nucleus	78.62	79.75
TraesCS2D01G287500.1	Wheat	nucleus	63.95	68.11
TraesCS2A01G289500.1	Wheat	nucleus	64.97	66.05
TraesCS2B01G306100.1	Wheat	nucleus	64.36	65.42
VIT_09s0054g01820.t01	Wine grape	nucleus	31.16	38.83
EES02307	Sorghum	nucleus	36.86	36.35
EES02157	Sorghum	nucleus	35.44	36.17
KXG38489	Sorghum	nucleus	31.16	35.75
EES00944	Sorghum	nucleus	32.99	33.68
EER95332	Sorghum	nucleus	35.44	33.14
KXG25416	Sorghum	nucleus	35.23	31.28
OQU89911	Sorghum	nucleus, plastid	32.59	30.02
EES04172	Sorghum	nucleus	31.57	29.81
EES11271	Sorghum	nucleus	36.05	29.55
KXG31026	Sorghum	nucleus	34.83	28.74
KXG36163	Sorghum	nucleus	32.99	27.84
KXG39813	Sorghum	nucleus, plastid	22.0	23.53
EER96827	Sorghum	nucleus	23.22	22.85
EES13982	Sorghum	nucleus	23.63	21.64
EER97442	Sorghum	nucleus	32.38	20.28

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EntrezGene:8056806	UniProt:C5XT99	EnsemblPlants:EES05153	ProteinID:EES05153
ProteinID:EES05153.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087	ScanProsite:PS00028
PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF48	SMART:SM00355	EnsemblPlantsGene:SORBI_3004G160100	SUPFAM:SSF57667
UniParc:UPI0001A8567B	RefSeq:XP_002452177.1	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:+:50673642..50677699

Molecular Weight (calculated)

53950.2 Da

IEP (calculated)

8.527

GRAVY (calculated)

-0.672

Length

491 amino acids

Sequence
(BLAST)

001: MSHTSEEESA LNNLQQQAKQ ACPAGSSKAD TAMPVGKKRR GHPGTPDADV EVVALSPKAL LATNRYICEV CHKGFQRDQN LQLHRRGHNL PWKLKQRSSN
101: EAKKKVYVCP EVTCPHHDGS RALGDLTGIK KHYSRKHGEK KWKCDRCSKK YAVQSDWKAH TKICGTKEYR CDCGTIFSRK DSFITHRAFC DALAEDNSRA
201: NHSLATMVGS LHGHQHNIFS HGVPTFPTSP TNVMANLSSN DHNSYSHLKS LSPYALITRN TTLFSNQISP KDSGFPLDGS ASSYPYMPMN SPYMSATALL
301: QKAAEMGAKT SQDPISPLLL KSFPSNVTTP SLRDHMDISS GRQGYCLGNS AASSVGIMAT EHEGSYMSGH SNILTNTPWV NNNRPTTVPL IGLMNDPFGM
401: RAEKDNSGIF PGGQTQHSRQ ENISRVGDAG LTQDFLGLGG SGNLEMTSET YNADVTALSY SDEQQKLQEH IYSYHQSSLN STALEKPIWE S

Best Arabidopsis Sequence Match ( AT3G50700.1 )
(BLAST)

001: MPVDLDNSST VSGEASVSIS STGNQNPLPN STGKKKRNLP GMPDPESEVI ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQKSNKEVK
101: KKVYVCPEVS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV QSDWKAHSKI CGTKEYKCDC GTLFSRRDSF ITHRAFCDAL AEENARSHHS
201: QSKKQNPEIL TRKNPVPNPV PAPVDTESAK IKSSSTLTIK QSESPKTPPE IVQEAPKPTS LNVVTSNGVF AGLFESSSAS PSIYTTSSSS KSLFASSSSI
301: EPISLGLSTS HGSSFLGSNR FHAQPAMSAT ALLQKAAQMG AASSGGSLLH GLGIVSSTST SIDAIVPHGL GLGLPCGGES SSGLKELMMG NSSVFGPKQT
401: TLDFLGLGRA VGNGNGPSNG LSTLVGGGTG IDMATTFGSG EFSGKDISRR KS

Arabidopsis Description

IDD2Protein indeterminate-domain 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCQ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.