Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G289500.1 | Wheat | nucleus | 98.34 | 98.34 |
| TraesCS2D01G287500.1 | Wheat | nucleus | 93.79 | 98.26 |
| Os02t0518500-00 | Rice | nucleus | 67.29 | 66.06 |
| TraesCS4B01G296200.1 | Wheat | nucleus | 65.84 | 65.7 |
| KXG30322 | Sorghum | nucleus | 64.6 | 65.68 |
| EES05153 | Sorghum | nucleus | 65.42 | 64.36 |
| Zm00001d016632_P001 | Maize | nucleus | 67.49 | 64.17 |
| VIT_09s0054g01820.t01 | Wine grape | nucleus | 30.43 | 37.31 |
| TraesCS6B01G154000.1 | Wheat | nucleus | 29.81 | 35.21 |
| TraesCS3B01G123600.1 | Wheat | nucleus | 34.99 | 34.0 |
| TraesCS3B01G195900.1 | Wheat | nucleus | 33.54 | 32.99 |
| TraesCS3B01G237700.1 | Wheat | nucleus | 31.88 | 32.63 |
| TraesCS4B01G262400.1 | Wheat | nucleus | 33.95 | 31.06 |
| TraesCS5B01G358600.1 | Wheat | nucleus, plastid | 33.54 | 29.67 |
| TraesCS3B01G497200.1 | Wheat | nucleus | 31.26 | 29.55 |
| TraesCS6B01G271000.1 | Wheat | nucleus | 32.92 | 27.6 |
| TraesCS2B01G421100.1 | Wheat | nucleus | 34.58 | 27.29 |
| TraesCS4B01G230800.1 | Wheat | nucleus, plastid | 21.74 | 25.93 |
| TraesCS5B01G232200.1 | Wheat | nucleus | 23.19 | 22.76 |
| TraesCS2B01G218900.1 | Wheat | nucleus | 32.09 | 19.33 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G306100.1 | EnsemblPlantsGene:TraesCS2B01G306100 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF48 | PFscan:PS50157 |
| ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | MapMan:15.5.15 | : |
Description
No Description!
Coordinates
chr2B:+:436992082..436994935
Molecular Weight (calculated)
53527.7 Da
IEP (calculated)
7.757
GRAVY (calculated)
-0.704
Length
483 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKSALSSLR VHSQHQKLSY QTMSQTSEEE SLFNFQQQQK LALCEAALSK SDPIIHAGKK RRGHPGQPDP DAEVVAFSPK TLLATNRYIC EVCHKGFQRD
101: QNLQLHRRCH NLPWKLKQTS GTDAKKKVYI CPEATCPHHD ATRALGDLTG IKKHYSRKHG EKKWKCERCS KKYAVQSDWR AHTKICGTKE YRCDCGTIFS
201: RKDSFITHRA FCDALTEDNS RINQSLAAMV GSLHGQQQSI FPHTIPGADS SPTDAAGNFS GNDQSSDDHL GSLSPYTFIR RSTSLFSNQM ILPHDSGTLA
301: DGSEPSSTYM SMSSPYMSAT ALLQKAAEMG AKTSEDPTTP LLLKGFPNYF TTKGHIGISS GILGTPIANS DRKKTAEDNS SYMNSPWTGS CMRPPNAVPW
401: IGLPPFSMGA ENRSSSMVDE DHMQQNAHET IFGVRDVGLT QDFLGLGGHG NAEMHDDTYN GEMALSYSNE QQKSEQDIYS YHQ
101: QNLQLHRRCH NLPWKLKQTS GTDAKKKVYI CPEATCPHHD ATRALGDLTG IKKHYSRKHG EKKWKCERCS KKYAVQSDWR AHTKICGTKE YRCDCGTIFS
201: RKDSFITHRA FCDALTEDNS RINQSLAAMV GSLHGQQQSI FPHTIPGADS SPTDAAGNFS GNDQSSDDHL GSLSPYTFIR RSTSLFSNQM ILPHDSGTLA
301: DGSEPSSTYM SMSSPYMSAT ALLQKAAEMG AKTSEDPTTP LLLKGFPNYF TTKGHIGISS GILGTPIANS DRKKTAEDNS SYMNSPWTGS CMRPPNAVPW
401: IGLPPFSMGA ENRSSSMVDE DHMQQNAHET IFGVRDVGLT QDFLGLGGHG NAEMHDDTYN GEMALSYSNE QQKSEQDIYS YHQ
001: MMMNRDILFH QQQQQQMEEN MSNLTSASGD QASVSSGNRT ETSGSNINQH HQEQCFVPQS SLKRKRNQPG NPDPEAEVMA LSPKTLMATN RFICEVCNKG
101: FQRDQNLQLH KRGHNLPWKL KQRSNKDVVR KKVYVCPEPG CVHHHPSRAL GDLTGIKKHF FRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTKEYKCDC
201: GTLFSRRDSF ITHRAFCDAL AEESARAMPN PIMIQASNSP HHHHHQTQQN IGFSSSSQNI ISNSNLHGPM KQEESQHHYQ NIPPWLISSN PNPNGNNGNL
301: FPPVASSVNT GRSSFPHPSP AMSATALLQK AAQMGSTKST TPEEEERSSR SSYNNLITTT MAAMMTSPPE PGFGFQDYYM MNHQHHGGGE AFNGGFVPGE
401: EKNDVVDDGG GETRDFLGLR SLMSHNEILS FANNLGNCLN TSATEQQQQQ HSHQD
101: FQRDQNLQLH KRGHNLPWKL KQRSNKDVVR KKVYVCPEPG CVHHHPSRAL GDLTGIKKHF FRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTKEYKCDC
201: GTLFSRRDSF ITHRAFCDAL AEESARAMPN PIMIQASNSP HHHHHQTQQN IGFSSSSQNI ISNSNLHGPM KQEESQHHYQ NIPPWLISSN PNPNGNNGNL
301: FPPVASSVNT GRSSFPHPSP AMSATALLQK AAQMGSTKST TPEEEERSSR SSYNNLITTT MAAMMTSPPE PGFGFQDYYM MNHQHHGGGE AFNGGFVPGE
401: EKNDVVDDGG GETRDFLGLR SLMSHNEILS FANNLGNCLN TSATEQQQQQ HSHQD
Arabidopsis Description
IDD7Protein indeterminate-domain 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1F5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.