Factsheet for TraesCS3B01G195900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G192600.1
TraesCS2A01G532900.1
TraesCS2B01G214600.1
TraesCS2B01G562400.1
TraesCS2D01G055700.1
TraesCS2D01G194800.1
TraesCS2D01G534700.1
TraesCS3A01G487500.1
TraesCS3B01G535100.1
TraesCS3D01G482600.1
TraesCS4A01G143200.1
TraesCS4A01G185900.1
TraesCS4A01G191300.1
TraesCS4B01G124000.1
TraesCS4B01G133000.1
TraesCS4B01G162200.1
TraesCS4D01G122000.1
TraesCS4D01G127800.2
TraesCS4D01G159600.1
TraesCS5A01G135000.1
TraesCS5A01G144000.1
TraesCS5B01G133800.1
TraesCS5B01G143100.1
TraesCS5D01G139500.1
TraesCS5D01G148000.1
TraesCS6D01G055100.1
TraesCS7A01G264800.1
TraesCS7B01G162700.4
TraesCS7D01G265600.3
TraesCSU01G014000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03840.1	TraesCS4A01G191300.1	AT3G54220.1	17785527
AT1G03840.1	TraesCS4B01G124000.1	AT3G54220.1	17785527
AT1G03840.1	TraesCS4D01G122000.1	AT3G54220.1	17785527
AT1G03840.1	TraesCS5A01G144000.1	AT3G54220.1	17785527
AT1G03840.1	TraesCS5B01G143100.1	AT3G54220.1	17785527
AT1G03840.1	TraesCS5D01G148000.1	AT3G54220.1	17785527
AT1G03840.1	TraesCS2A01G192600.1	AT4G37650.1	17785527
AT1G03840.1	TraesCS2B01G214600.1	AT4G37650.1	17785527
AT1G03840.1	TraesCS2D01G194800.1	AT4G37650.1	17785527
AT5G44160.1	TraesCS2A01G532900.1	AT1G50420.1	21798944
AT5G44160.1	TraesCS2B01G562400.1	AT1G50420.1	21798944
AT5G44160.1	TraesCS2D01G055700.1	AT1G50420.1	21798944
AT5G44160.1	TraesCS2D01G534700.1	AT1G50420.1	21798944
AT5G44160.1	TraesCS3A01G487500.1	AT1G50420.1	21798944
AT5G44160.1	TraesCS3B01G535100.1	AT1G50420.1	21798944
AT5G44160.1	TraesCS3D01G482600.1	AT1G50420.1	21798944
AT5G44160.1	TraesCS4A01G185900.1	AT1G50420.1	21798944
AT5G44160.1	TraesCS4B01G133000.1	AT1G50420.1	21798944
AT5G44160.1	TraesCS4D01G127800.2	AT1G50420.1	21798944
AT5G44160.1	TraesCS5A01G135000.1	AT1G50420.1	21798944
AT5G44160.1	TraesCS5B01G133800.1	AT1G50420.1	21798944
AT5G44160.1	TraesCS5D01G139500.1	AT1G50420.1	21798944
AT5G44160.1	TraesCS6D01G055100.1	AT1G50420.1	21798944
AT5G44160.1	TraesCSU01G014000.1	AT1G50420.1	21798944
AT5G44160.1	TraesCS4A01G143200.1	AT3G12280.1	22921914
AT5G44160.1	TraesCS4B01G162200.1	AT3G12280.1	22921914
AT5G44160.1	TraesCS4D01G159600.1	AT3G12280.1	22921914
AT5G44160.1	TraesCS7A01G264800.1	AT3G12280.1	22921914
AT5G44160.1	TraesCS7B01G162700.4	AT3G12280.1	22921914
AT5G44160.1	TraesCS7D01G265600.3	AT3G12280.1	22921914

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G170700.1	Wheat	nucleus	95.72	96.11
TraesCS3D01G171300.1	Wheat	nucleus	95.52	95.52
CDY14910	Canola	nucleus	21.18	78.2
Os01t0242200-01	Rice	nucleus	65.58	77.59
Zm00001d039254_P001	Maize	nucleus	52.75	73.16
CDY72283	Canola	nucleus	27.9	72.49
Bra036013.1-P	Field mustard	nucleus	23.22	72.15
EES02157	Sorghum	nucleus	67.21	68.61
CDX89862	Canola	nucleus	49.29	50.42
Bra015271.1-P	Field mustard	nucleus	49.49	50.41
CDY18188	Canola	nucleus	48.88	50.1
AT5G44160.1	Thale cress	nucleus	47.25	49.79
CDY32514	Canola	nucleus	49.49	49.59
Bra032541.1-P	Field mustard	nucleus	49.49	49.59
AT1G03840.1	Thale cress	nucleus	50.92	49.41
CDY22307	Canola	nucleus	46.64	49.35
Bra033724.1-P	Field mustard	nucleus	46.64	49.35
CDX94759	Canola	nucleus	46.64	49.35
Zm00001d009030_P002	Maize	nucleus	42.77	46.98
VIT_12s0028g03030.t01	Wine grape	nucleus	40.33	46.37
Solyc07g053570.2.1	Tomato	nucleus	46.44	45.42
PGSC0003DMT400024272	Potato	nucleus	45.62	45.25
KRH49655	Soybean	nucleus	31.77	43.09
KRH25657	Soybean	nucleus	40.12	41.83
TraesCS6B01G154000.1	Wheat	nucleus	34.83	41.81
KRH55868	Soybean	nucleus	39.51	40.93
KRH22332	Soybean	nucleus	39.31	40.72
KRH26995	Soybean	nucleus	39.1	40.0
TraesCS3B01G123600.1	Wheat	nucleus	39.31	38.83
TraesCS3B01G237700.1	Wheat	nucleus	37.07	38.56
TraesCS4B01G262400.1	Wheat	nucleus	39.31	36.55
TraesCS5B01G358600.1	Wheat	nucleus, plastid	40.33	36.26
TraesCS3B01G497200.1	Wheat	nucleus	37.68	36.2
TraesCS4B01G296200.1	Wheat	nucleus	34.62	35.12
TraesCS6B01G271000.1	Wheat	nucleus	40.12	34.2
TraesCS2B01G306100.1	Wheat	nucleus	32.99	33.54
TraesCS2B01G421100.1	Wheat	nucleus	41.75	33.5
TraesCS4B01G230800.1	Wheat	nucleus, plastid	23.83	28.89
TraesCS5B01G232200.1	Wheat	nucleus	24.85	24.8
TraesCS2B01G218900.1	Wheat	nucleus	36.05	22.07

Protein Annotations

EnsemblPlants:TraesCS3B01G195900.1	EnsemblPlantsGene:TraesCS3B01G195900	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF26	PFAM:PF00096
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	MapMan:15.5.15

Description

No Description!

Coordinates

chr3B:+:222318218..222319806

Molecular Weight (calculated)

52049.5 Da

IEP (calculated)

9.100

GRAVY (calculated)

-0.472

Length

491 amino acids

Sequence
(BLAST)

001: MASEAMPNPF APLTNQPQQQ QPPSHEHPAA PPPKKKRNLP GTPDPDAEVI ALSPRTLMAT NRFVCEICGK GFQRDQNLQL HRRGHNLPWK LRQRSGKEPR
101: KRVYVCPEKS CVHHNPSRAL GDLTGIKKHF CRKHGEKKWK CDKCAKRYAV QSDWKAHSKT CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AEETARLTAA
201: SSGAAVAAVP SMCGGGQGYL FARPNSMMLQ PPLTAHLKPA AAGGQILGHA AGAVGDPLCD GAAARHGGLS LWGSDNTLPS SMGHHIGGLL SSGGGGTGAP
301: MPMQMYADLF APSSGAPPQF DMAQLSWLYG NNGGNGKLSS SNASELTTNS SREADSAPSV FSGQQHAKPA AAPTDMSATA LLQRAAQIGS VTSSNTSMPL
401: AGAFEQVPNS AGRIDERSKF DDRALFGASQ HNANVPSAMG ELSAATGNVP YDVFSAARHA GLKDAVGREE TRDFLGVGMQ ALCSSSINGW I

Best Arabidopsis Sequence Match ( AT1G03840.1 )
(BLAST)

001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI

Arabidopsis Description

MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.