Factsheet for TraesCS7D01G265600.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G290800.1	nucleus
TraesCS1B01G300100.1	nucleus
TraesCS1D01G289400.1	nucleus
TraesCS2A01G031800.1	nucleus
TraesCS2B01G043500.1	nucleus
TraesCS2D01G031400.1	nucleus
TraesCS4A01G046900.1	nucleus
TraesCS4A01G149300.1
TraesCS4A01G234600.1	nucleus
TraesCS4A01G388400.1
TraesCS4B01G080500.1	nucleus
TraesCS4B01G158500.1
TraesCS4B01G257900.1	nucleus
TraesCS4D01G079400.1	nucleus
TraesCS4D01G257800.1	nucleus
TraesCS5A01G068600.1	nucleus
TraesCS5A01G161000.1	nucleus, nucleus
TraesCS5A01G200500.2	nucleus
TraesCS5B01G075000.1	nucleus
TraesCS5B01G158400.1	nucleus, nucleus
TraesCS5B01G199100.1	nucleus
TraesCS5D01G080600.1	nucleus
TraesCS5D01G165900.1	nucleus, nucleus
TraesCS5D01G206200.1	nucleus
TraesCS7A01G089100.1
TraesCS7A01G089200.1
TraesCS7A01G308300.1
TraesCS7A01G479000.1	nucleus
TraesCS7D01G084500.1
TraesCS7D01G305100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12280.1	TraesCS2A01G031800.1	AT1G47870.1	20407024
AT3G12280.1	TraesCS2B01G043500.1	AT1G47870.1	20407024
AT3G12280.1	TraesCS2D01G031400.1	AT1G47870.1	20407024
AT3G12280.1	TraesCS2A01G031800.1	AT1G47870.1	20706207
AT3G12280.1	TraesCS2B01G043500.1	AT1G47870.1	20706207
AT3G12280.1	TraesCS2D01G031400.1	AT1G47870.1	20706207
AT3G12280.1	TraesCS5A01G200500.2	AT1G70210.1	20407024
AT3G12280.1	TraesCS5B01G199100.1	AT1G70210.1	20407024
AT3G12280.1	TraesCS5D01G206200.1	AT1G70210.1	20407024
AT3G12280.1	TraesCS4A01G388400.1	AT3G20740.1	15221456
AT3G12280.1	TraesCS7A01G089100.1	AT3G20740.1	15221456
AT3G12280.1	TraesCS7A01G089200.1	AT3G20740.1	15221456
AT3G12280.1	TraesCS7A01G308300.1	AT3G20740.1	15221456
AT3G12280.1	TraesCS7D01G084500.1	AT3G20740.1	15221456
AT3G12280.1	TraesCS7D01G305100.1	AT3G20740.1	15221456
AT3G12280.1	TraesCS4A01G388400.1	AT3G20740.1	18812497
AT3G12280.1	TraesCS7A01G089100.1	AT3G20740.1	18812497
AT3G12280.1	TraesCS7A01G089200.1	AT3G20740.1	18812497
AT3G12280.1	TraesCS7A01G308300.1	AT3G20740.1	18812497
AT3G12280.1	TraesCS7D01G084500.1	AT3G20740.1	18812497
AT3G12280.1	TraesCS7D01G305100.1	AT3G20740.1	18812497
AT3G12280.1	TraesCS1A01G290800.1	AT3G24140.1	24571519
AT3G12280.1	TraesCS1B01G300100.1	AT3G24140.1	24571519
AT3G12280.1	TraesCS1D01G289400.1	AT3G24140.1	24571519
AT3G12280.1	TraesCS5A01G161000.1	AT3G50070.1	20407024
AT3G12280.1	TraesCS5B01G158400.1	AT3G50070.1	20407024
AT3G12280.1	TraesCS5D01G165900.1	AT3G50070.1	20407024
AT3G12280.1	TraesCS4A01G149300.1	AT3G55760.1	20706207
AT3G12280.1	TraesCS4B01G158500.1	AT3G55760.1	20706207
AT3G12280.1	TraesCS5A01G161000.1	AT4G34160.1	20407024
AT3G12280.1	TraesCS5B01G158400.1	AT4G34160.1	20407024
AT3G12280.1	TraesCS5D01G165900.1	AT4G34160.1	20407024
AT3G12280.1	TraesCS4A01G046900.1	AT4G37630.1	20407024
AT3G12280.1	TraesCS4A01G234600.1	AT4G37630.1	20407024
AT3G12280.1	TraesCS4B01G080500.1	AT4G37630.1	20407024
AT3G12280.1	TraesCS4B01G257900.1	AT4G37630.1	20407024
AT3G12280.1	TraesCS4D01G079400.1	AT4G37630.1	20407024
AT3G12280.1	TraesCS4D01G257800.1	AT4G37630.1	20407024
AT3G12280.1	TraesCS5A01G068600.1	AT4G37630.1	20407024
AT3G12280.1	TraesCS5B01G075000.1	AT4G37630.1	20407024
AT3G12280.1	TraesCS5D01G080600.1	AT4G37630.1	20407024
AT3G12280.1	TraesCS7A01G479000.1	AT4G37630.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G162700.4	Wheat	nucleus, plastid	98.64	99.41
TraesCS7A01G264800.1	Wheat	nucleus	98.25	99.02
HORVU7Hr1G055440.9	Barley	plastid	94.75	91.64
Os08t0538700-01	Rice	nucleus	81.34	82.87
EES14166	Sorghum	nucleus	78.81	80.14
Zm00001d031678_P003	Maize	cytosol, nucleus, plastid	77.75	78.2
Zm00001d052695_P016	Maize	nucleus	76.29	77.95
GSMUA_Achr8P00470_001	Banana	nucleus	65.11	66.67
KRH13310	Soybean	nucleus	58.89	60.3
VIT_04s0008g02780.t01	Wine grape	nucleus	58.7	60.04
KRH20664	Soybean	nucleus	58.99	59.86
KRH63701	Soybean	nucleus	58.79	59.66
PGSC0003DMT400030280	Potato	nucleus	58.5	59.25
Solyc09g091280.2.1	Tomato	cytosol	58.31	58.94
AT3G12280.1	Thale cress	nucleus	56.75	57.65
CDY08440	Canola	nucleus	55.78	56.5
CDY52614	Canola	cytosol	55.3	56.45
Bra034764.1-P	Field mustard	nucleus	55.69	56.4
CDY42141	Canola	cytosol	55.59	56.24
CDY50559	Canola	nucleus	55.0	55.76
Bra038707.1-P	Field mustard	nucleus	55.1	55.64
CDX73827	Canola	nucleus	53.84	54.8
Bra001446.1-P	Field mustard	nucleus	53.45	53.55
VIT_14s0068g00840.t01	Wine grape	cytosol	30.42	53.23
CDY00765	Canola	mitochondrion	54.13	49.91
TraesCS4D01G159600.1	Wheat	cytosol, nucleus, plastid	46.94	49.24
CDY52391	Canola	nucleus	9.43	41.99

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.2.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006357	GO:GO:0007049
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0051726	PFAM:PF01857
PFAM:PF01858	PFAM:PF08934	PFAM:PF11934	PANTHER:PTHR13742	PANTHER:PTHR13742:SF22	InterPro:RBR
InterPro:RB_A	InterPro:RB_B	InterPro:RB_C	InterPro:RB_N	InterPro:RB_fam	SMART:SM01367
SMART:SM01368	SUPFAM:SSF47954	EnsemblPlantsGene:TraesCS7D01G265600	EnsemblPlants:TraesCS7D01G265600.3	TIGR:cd00043	SEG:seg

Description

No Description!

Coordinates

chr7D:-:246832251..246837788

Molecular Weight (calculated)

113421.0 Da

IEP (calculated)

8.683

GRAVY (calculated)

-0.186

Length

1029 amino acids

Sequence
(BLAST)

0001: MDGADAPQPA RSGSGVTACS TSTAQGRMNG GANASNNAAA AMEERFADVC KRKLVLDEST TRQAMQLFKE TKIILLSSMS SLGSGSPEEI ERSWCACVLY
0101: CVSKLGNAGK AKEDRGITLR QILRAFDLKI VDFFKEMPQF CIKVGFILTG LYGSDWEKRL ELQELQANLV HLCSLGRHYR RAYQELFLLN DGKPANNSSE
0201: LNVQQASEYY DFGWLLFLVL RNQASSAVKN LLTSTTELVS VLAVLIIHIP VRLRNFSIED SSCFAKKSDK GVNLIASLCE RYLTSEDELS KALQKTNILI
0301: KGILKKKPCS DVSECQQGSL SFIDPEGLTF FKNFLEEDSL KSSLQVLEKE YVNGLDTKGE LDARMFANEE DSLLGSGSLS GGALKLPGTK RKYDDVMASP
0401: TKSTASRAPM SPPRFCPSPN GNSFCNSKMA PFTPVSTAMT TAKWLRSAIS PLPSKPSGEL LRFFSACDKD VTDDITCRAA IILGAIFTGS SFGERMCTSL
0501: RNTSGMDAIW TEQRKMEALK LYYRVLESMC RAESQILSGS NLTSLLSNER FHRCMIACSA ELVLATHKTV TMMFPAVLEK TGITAFDLSK VIESFVRHED
0601: SLPRELKRHL NSLEERLLES MAWEKGSSMY NSLIVARPTL SAEINRLGLL AEPMPSLDAI AVHHDISLGG LPPLPFHKQP DKDEVRSPKR ACTERRNVLV
0701: DNSFRSPVKD VIKSKFLPPL QSAFASPTRP NPAAGGETCA ETGIGVFLSK ITKLAAIRIK CLCERLQLSQ QILERVYSLV QQIISQQTAL FFNRHIDQII
0801: LCCIYGVAKI SQLALTFKEI IFSYRKQSQC KPQVFRSVYV NWPSRSRSGK IGEDHVDIIT FYNEVFIPTV KPLLVDLGPG TSPNRNNEPK SGGDVFVFFV
0901: TSAAPFPESP RLSRFPNLPD MSPKKVSATH NVYVSPLRSS KMDTLLSPSS KSYYACVGES THAFQSPSKD LNAINTRLNS GKKVNGRLNF DVVSDLVVAR
1001: SLSDQNGGSA AAMAVFGTRT PVKGEQQDP

Best Arabidopsis Sequence Match ( AT3G12280.1 )
(BLAST)

0001: MEEVQPPVTP PIEPNGKRSE ASLLDICEKV LSLDGSTCDE ALKLFTETKR ILSASMSNIG SGTREEVERF WFAFILYSVK RLSVRKEADG LSVSGDNEFN
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSSN RKRTLNFDAE AGMVSDSMVA NSLNLQNQNQ NQNGSDASSS
1001: GGAAPLKTEP TDS

Arabidopsis Description

RBR1RBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.