Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G031400.1 | Wheat | plastid | 88.74 | 89.32 |
| HORVU2Hr1G004820.2 | Barley | cytosol | 21.21 | 78.4 |
| TraesCS2A01G031800.1 | Wheat | plastid | 76.62 | 78.32 |
| Os04t0112200-00 | Rice | nucleus, plastid | 52.6 | 50.62 |
| EES11756 | Sorghum | plastid | 50.43 | 47.55 |
| Zm00001d004512_P001 | Maize | plastid | 46.97 | 46.37 |
| CDY16998 | Canola | nucleus | 28.14 | 35.42 |
| Bra014096.1-P | Field mustard | nucleus | 28.14 | 35.42 |
| GSMUA_Achr4P17950_001 | Banana | nucleus | 30.52 | 34.9 |
| CDY17797 | Canola | nucleus | 28.36 | 34.75 |
| KRH61047 | Soybean | cytosol, nucleus, plastid | 26.41 | 34.37 |
| AT1G47870.1 | Thale cress | nucleus, plastid | 27.92 | 32.58 |
| PGSC0003DMT400009682 | Potato | plastid | 27.49 | 31.75 |
| KRH51709 | Soybean | nucleus | 29.22 | 31.69 |
| Solyc04g081350.2.1 | Tomato | plastid | 27.06 | 31.49 |
| TraesCS6B01G233700.2 | Wheat | mitochondrion, plastid | 30.74 | 31.0 |
| TraesCS5B01G125100.1 | Wheat | cytosol | 29.22 | 30.41 |
| VIT_18s0001g14110.t01 | Wine grape | nucleus | 29.0 | 29.84 |
| TraesCS2B01G313600.2 | Wheat | nucleus | 28.14 | 28.45 |
| KRH07603 | Soybean | cytosol | 10.39 | 25.4 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:13.1.2.2 | MapMan:15.5.10 | InterPro:E2F | InterPro:E2F-DP_heterodim | InterPro:E2F_CC-MB |
| InterPro:E2F_WHTH_DNA-bd_dom | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005667 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 | InterPro:IPR036388 | PFAM:PF02319 |
| PFAM:PF16421 | PANTHER:PTHR12081 | PANTHER:PTHR12081:SF49 | SMART:SM01372 | SUPFAM:SSF144074 | SUPFAM:SSF46785 |
| EnsemblPlantsGene:TraesCS2B01G043500 | EnsemblPlants:TraesCS2B01G043500.1 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | TIGR:cd14660 | SEG:seg |
Description
No Description!
Coordinates
chr2B:-:20149448..20153398
Molecular Weight (calculated)
50548.1 Da
IEP (calculated)
6.353
GRAVY (calculated)
-0.658
Length
462 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGSPSLPLP LPRPRPAHRP PLPPQVFLRC PAPPRGAVPA APPHVHYFRA PSPIPVYSPR LPGPRYIAAR PPTPPPPAPA AAAAAPPRPP QASPAQLLPP
101: PRPPQPVYEN VVPPARRRGR PKSKAPENEQ KIEIENAQSE VGKGEISQGH HKESTTGPTK GIKRARKPHA SIEGDAANNC RYDSSLGLLT KKFINLLKGA
201: EDGTLDLNKA VEILEVQKRR IYDITNVLEG VDLIEKGLKN MIRWKGFDML LPKEMELQTS ALKEELDSSH DEECRLDEEI REAQEKLLAL KLNKDKKKWL
301: YLSKEDICKI PHLQGSTLIA INAPHGTCVE APDPNADMDI CKDLESQEKH YQLLLRSSMG PIDCFLISDH QGVSDPEQVA QDNLGHASTA GGSDAPRPVD
401: DHPSQAPEKG EGDTVGKHTS EPSSTHEPMS GILKILLPDT DVDADYWLAS DIDATMTETW AT
101: PRPPQPVYEN VVPPARRRGR PKSKAPENEQ KIEIENAQSE VGKGEISQGH HKESTTGPTK GIKRARKPHA SIEGDAANNC RYDSSLGLLT KKFINLLKGA
201: EDGTLDLNKA VEILEVQKRR IYDITNVLEG VDLIEKGLKN MIRWKGFDML LPKEMELQTS ALKEELDSSH DEECRLDEEI REAQEKLLAL KLNKDKKKWL
301: YLSKEDICKI PHLQGSTLIA INAPHGTCVE APDPNADMDI CKDLESQEKH YQLLLRSSMG PIDCFLISDH QGVSDPEQVA QDNLGHASTA GGSDAPRPVD
401: DHPSQAPEKG EGDTVGKHTS EPSSTHEPMS GILKILLPDT DVDADYWLAS DIDATMTETW AT
001: MAATSNSGED PTLSYHHRSP FRFELLQSIS SSDPRYSSLT PSSTNRPFSV SQSLPNSQLS PLISPHWDDS YSQITQKVQK SRKNHRIQLG SIANMSGGES
101: IDIAKVIVKQ ESSPQNVKRV YNKSKGGTKL LKAGKRMANG EVQNGGLNGA SINCRYDSSL GLLTKKFVKL IQEAEDGTLD LNYCAVVLEV QKRRIYDITN
201: VLEGIGLIEK TTKNHIRWKG ADNLGQKDLG DQISRLKSEV ESMQSEESRL DDLIRERQEA LRSLEEDDYC RRYMFMTEED ITSLPRFQNQ TLLAIKAPTA
301: SYIEVPDPDE MSFPQQYRMV IRSRMGPIDV YLLSKYKGDS AETSDKLGNE SDQKAPVGVD TPSLKIVTSD TDLKADYWFE SDAEVSLTDL WSNFNS
101: IDIAKVIVKQ ESSPQNVKRV YNKSKGGTKL LKAGKRMANG EVQNGGLNGA SINCRYDSSL GLLTKKFVKL IQEAEDGTLD LNYCAVVLEV QKRRIYDITN
201: VLEGIGLIEK TTKNHIRWKG ADNLGQKDLG DQISRLKSEV ESMQSEESRL DDLIRERQEA LRSLEEDDYC RRYMFMTEED ITSLPRFQNQ TLLAIKAPTA
301: SYIEVPDPDE MSFPQQYRMV IRSRMGPIDV YLLSKYKGDS AETSDKLGNE SDQKAPVGVD TPSLKIVTSD TDLKADYWFE SDAEVSLTDL WSNFNS
Arabidopsis Description
E2FCE2FC [Source:UniProtKB/TrEMBL;Acc:A0A178WB46]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.