CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
golgi 2
extracellular 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	golgi
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH05109
KRH09492
KRH13310
KRH16010
KRH20664
KRH27723	cytosol, nucleus
KRH28363
KRH38971
KRH52488
KRH52489
KRH63701
KRH77118
KRH77687	cytosol, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G47870.1	KRH13310	AT3G12280.1	22921914
AT1G47870.1	KRH20664	AT3G12280.1	22921914
AT1G47870.1	KRH63701	AT3G12280.1	22921914
AT1G47870.1	KRH09492	AT3G17760.1	20706207
AT1G47870.1	KRH38971	AT3G17760.1	20706207
AT1G47870.1	KRH28363	AT4G37630.1	20407024
AT1G47870.1	KRH77118	AT4G37630.1	20407024
AT1G47870.1	KRH27723	AT5G03415.1	11891240
AT1G47870.1	KRH77687	AT5G03415.1	11891240
AT1G47870.1	KRH27723	AT5G03415.1	20407024
AT1G47870.1	KRH77687	AT5G03415.1	20407024
AT1G47870.1	KRH27723	AT5G03415.1	20407024
AT1G47870.1	KRH77687	AT5G03415.1	20407024
AT1G47870.1	KRH05109	AT5G25460.1	20706207
AT1G47870.1	KRH16010	AT5G25460.1	20706207
AT1G47870.1	KRH52488	AT5G25460.1	20706207
AT1G47870.1	KRH52489	AT5G25460.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07603	Soybean	cytosol	33.33	75.13
KRH61047	Soybean	cytosol, nucleus, plastid	57.75	69.3
Bra014096.1-P	Field mustard	nucleus	37.32	43.32
CDY16998	Canola	nucleus	37.32	43.32
VIT_18s0001g14110.t01	Wine grape	nucleus	44.13	41.87
CDY17797	Canola	nucleus	36.62	41.38
AT1G47870.1	Thale cress	nucleus, plastid	37.56	40.4
PGSC0003DMT400009682	Potato	plastid	33.8	36.0
Solyc04g081350.2.1	Tomato	plastid	32.63	35.01
KRH25298	Soybean	nucleus	36.15	34.22
GSMUA_Achr4P17950_001	Banana	nucleus	32.39	34.16
KRH30372	Soybean	nucleus	36.38	33.7
KRH72218	Soybean	nucleus	35.21	32.05
KRH32815	Soybean	nucleus	34.74	31.76
TraesCS2A01G031800.1	Wheat	plastid	32.16	30.31
TraesCS2D01G031400.1	Wheat	plastid	32.39	30.07
TraesCS2B01G043500.1	Wheat	plastid	31.69	29.22
EES11756	Sorghum	plastid	32.86	28.57
Zm00001d004512_P001	Maize	plastid	31.22	28.42
Os04t0112200-00	Rice	nucleus, plastid	30.75	27.29
HORVU2Hr1G004820.2	Barley	cytosol	7.98	27.2
KRH26172	Soybean	nucleus	10.33	23.4

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100797301	MapMan:13.1.2.2	MapMan:15.5.10	EMBL:ACUP02003386	ncoils:Coil
InterPro:E2F	InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom	EnsemblPlantsGene:GLYMA_06G024900	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0046983	InterPro:IPR036388	UniProt:K7KSN5	EnsemblPlants:KRH51709	ProteinID:KRH51709
ProteinID:KRH51709.1	PFAM:PF02319	PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF51	SMART:SM01372
SUPFAM:SSF144074	SUPFAM:SSF46785	TMHMM:TMhelix	UniParc:UPI000295AF69	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:1863008..1866952

Molecular Weight (calculated)

48200.2 Da

IEP (calculated)

5.978

GRAVY (calculated)

-0.533

Length

426 amino acids

Sequence
(BLAST)

001: MVYVREAQKG AQKVRPKRKR KGRGGVCIRT ELTAFFALVL AATPYQTFTF TSLFSFLLLY ITVLLFHTQT LSLVSSISLQ IHSPFPNMSQ RYDNNVFKSH
101: INNIQLAPGI TETLHLPPPL QTEPTIRGKQ NGKSKGPRNA KSANADSPNS TAVNNCRYDS SLGLLTKKFV SLIQDAKDGT LDLNRTAEIL EVQKRRIYDI
201: TNVLEGVGLI EKTSKNHIQW KGCDGLGPQE LEDQVNSLKA EVDSLYAEES ELDDCIRKKQ ELLRNLEESE SSQKYLFLTK EDILSLPCFQ NQEIIAIKAP
301: KASCIEVPDP DEELGFRQRQ YKMIVRSAIG PINLYLLSKD DSKFEDDSAK RMKLMDPSWN SDPIRKRGVG LLESQHDEKN PSEHFSLQGS QAFGIQEITP
401: TDFEMEDDYW FQSDPGVSQT ELWGNE

Best Arabidopsis Sequence Match ( AT1G47870.2 )
(BLAST)

001: MAATSNSGED PTLSYHHRSP FRFELLQSIS SSDPRYSSLT PSSTNRPFSV SQSLPNSQLS PLISPHWDDS YSQITQKVKS RKNHRIQLGS IANMSGGESI
101: DIAKVIVKQE SSPQNVKRVY NKSKGGTKLL KAGKRMANGE VQNGGLNGAS INCRYDSSLG LLTKKFVKLI QEAEDGTLDL NYCAVVLEVQ KRRIYDITNV
201: LEGIGLIEKT TKNHIRWKGA DNLGQKDLGD QISRLKSEVE SMQSEESRLD DLIRERQEAL RSLEEDDYCR RYMFMTEEDI TSLPRFQNQT LLAIKAPTAS
301: YIEVPDPDEM SFPQQYRMVI RSRMGPIDVY LLSKYKGDSA ETSDKLGNES DQKAPVGVDT PSLKIVTSDT DLKADYWFES DAEVSLTDLW SNFNS

Arabidopsis Description

E2FCE2FC [Source:UniProtKB/TrEMBL;Acc:A0A178WB46]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.