CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25298	Soybean	nucleus	93.04	95.11
VIT_06s0080g01110.t01	Wine grape	nucleus	66.96	69.06
Solyc11g068800.1.1	Tomato	mitochondrion, nucleus	63.04	64.59
PGSC0003DMT400050512	Potato	mitochondrion, nucleus	61.52	62.47
PGSC0003DMT400015188	Potato	nucleus	58.48	60.72
GSMUA_Achr5P17430_001	Banana	plastid	27.17	58.96
KRH72218	Soybean	nucleus	57.83	56.84
Os04t0416100-01	Rice	nucleus	39.35	56.74
KRH32815	Soybean	nucleus	56.74	56.01
GSMUA_Achr6P07100_001	Banana	mitochondrion	56.52	54.85
CDX92373	Canola	nucleus	52.17	54.18
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	48.04	54.03
CDX98588	Canola	nucleus	51.96	53.95
GSMUA_Achr2P20420_001	Banana	nucleus	48.91	53.83
Bra002398.1-P	Field mustard	nucleus	51.74	53.72
OQU78759	Sorghum	plastid	44.13	53.7
GSMUA_Achr10P...	Banana	nucleus, plastid	51.3	53.64
AT5G22220.2	Thale cress	cytosol	54.57	53.52
CDX70990	Canola	nucleus	53.04	53.16
Bra006615.1-P	Field mustard	nucleus	52.39	52.05
TraesCS5B01G125100.1	Wheat	cytosol	49.35	51.13
TraesCS5A01G125900.3	Wheat	cytosol	49.13	50.9
TraesCS5D01G133600.1	Wheat	cytosol	48.91	50.68
Os12t0158800-01	Rice	nucleus	49.13	50.67
Zm00001d050664_P002	Maize	mitochondrion, plastid	41.09	49.74
CDX88807	Canola	cytosol	51.96	49.48
Zm00001d023465_P002	Maize	cytosol	48.7	49.23
TraesCS6D01G182600.1	Wheat	mitochondrion, plastid	48.91	49.13
TraesCS6B01G233700.2	Wheat	mitochondrion, plastid	48.91	49.13
TraesCS6A01G195500.2	Wheat	mitochondrion, plastid	48.7	48.91
Os02t0537500-01	Rice	mitochondrion	50.43	48.84
HORVU0Hr1G038470.7	Barley	mitochondrion, plastid	48.04	48.25
HORVU5Hr1G040190.4	Barley	plastid	48.91	46.58
TraesCS2B01G313600.2	Wheat	nucleus	46.09	46.39
Zm00001d016737_P002	Maize	mitochondrion, plastid	46.96	46.35
TraesCS2A01G297400.1	Wheat	nucleus	46.09	46.29
TraesCS2D01G295300.2	Wheat	mitochondrion	45.87	46.07
Zm00001d003755_P001	Maize	nucleus	36.09	45.23
OQU81541	Sorghum	nucleus	44.78	45.08
OQU85083	Sorghum	mitochondrion, plastid	43.48	42.46
KRH61047	Soybean	cytosol, nucleus, plastid	30.43	39.44
KRH26172	Soybean	nucleus	15.43	37.77
HORVU2Hr1G073750.2	Barley	plastid	44.35	36.89
KRH51709	Soybean	nucleus	33.7	36.38
KRH07603	Soybean	cytosol	13.48	32.8
Solyc06g074010.2.1	Tomato	nucleus	59.13	32.11

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100819817	MapMan:13.1.2.2	MapMan:15.5.10	EMBL:ACUP02007004	ncoils:Coil
InterPro:E2F	InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom	EnsemblPlantsGene:GLYMA_11G180100	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983
InterPro:IPR036388	UniProt:K7LQ43	EnsemblPlants:KRH30372	ProteinID:KRH30372	ProteinID:KRH30372.1	PFAM:PF02319
PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF72	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785
UniParc:UPI000294C88C	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr11:+:24577485..24583679

Molecular Weight (calculated)

50651.3 Da

IEP (calculated)

4.602

GRAVY (calculated)

-0.672

Length

460 amino acids

Sequence
(BLAST)

001: MSASRAPPAG AGASKPPDQI MHSMKRQLPF SSMKPPFVAA GDYHRFAPDQ RHDAAEAIVV KTPQLKRKSE AADFEADSGD RMTPGFTEAA NSPFQTPVSG
101: KTGKGGKSFR LTKGNRLGTQ TPGSNIGSPS GNNLTPAGPC RYDSSLGLLT KKFINLIKQA EDGILDLNKA ADTLEVQKRR IYDITNVLEG IGLIEKKLKN
201: RIQWKGLDVS RPGEADDSFP SLQAEVENLT MKERQLDEQI REMQERLRDL SEDENNDKLL FVTEEDIKNL PCFQNETLIA IKAPHGTTLE VPDPDEAVDY
301: PQRRYRIVLR STMGPIDLYL VSQFEEKFEE INGVDVAPKL PSSPDGTKHQ STVVPEDRGK DIEVQGQEAP GPSSDFTTSQ DFVSGIMKIV PSDVASEADY
401: WLLSDADVSI TDMWRTEPGV EWNELEPLQE DYCMTRENTA TPSHPSNVDE VSSAPKSTGG

Best Arabidopsis Sequence Match ( AT5G22220.2 )
(BLAST)

001: MSEEVPQQFP SSKRQLHPSL SSMKPPLVAP GEYHRFDAAE TRGGGAVADQ VVSDAIVIKS TLKRKTDLVN QIVEVNELNT GVLQTPVSGK GGKAKKTSRS
101: AKSNKSGTLA SGSNAGSPGN NFAQAGTCRY DSSLGLLTKK FINLIKQAED GILDLNKAAD TLEVQKRRIY DITNVLEGIG LIEKTLKNRI QWKGLDVSKP
201: GETIESIANL QDEVQNLAAE EARLDDQIRE SQERLTSLSE DENNKRLLFV TENDIKNLPC FQNKTLIAVK APHGTTLEVP DPDEAGGYQR RYRIILRSTM
301: GPIDVYLVSQ FEESFEDIPQ ADEPSNVPDE PSNVPDVPSN LPSTSGLPEN HDVSMPMKEE STERNMETQE VDDTQRVYSD IESHDFVDGI MKIVPPDLDM
401: GVDYWFRSEV GEVSITDMWP DESGPDWNQM ITFDQDHAGP SDNKILEQPQ TPSSPTPEES TATRSPTGS

Arabidopsis Description

E2FBTranscription factor E2FB [Source:UniProtKB/Swiss-Prot;Acc:Q9FV71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.