Factsheet for GSMUA_Achr10P15780_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P20420_001	Banana	nucleus	64.55	67.94
GSMUA_Achr5P17430_001	Banana	plastid	27.5	57.08
GSMUA_Achr6P07100_001	Banana	mitochondrion	61.36	56.96
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	50.23	54.03
VIT_08s0007g02510.t01	Wine grape	plastid	56.82	53.65
VIT_06s0080g01110.t01	Wine grape	nucleus	53.64	52.91
Solyc11g068800.1.1	Tomato	mitochondrion, nucleus	52.95	51.89
KRH25298	Soybean	nucleus	52.95	51.78
KRH30372	Soybean	nucleus	53.64	51.3
PGSC0003DMT400050512	Potato	mitochondrion, nucleus	52.5	50.99
PGSC0003DMT400015188	Potato	nucleus	50.0	49.66
KRH32815	Soybean	nucleus	51.59	48.71
KRH72218	Soybean	nucleus	51.59	48.5
PGSC0003DMT400042347	Potato	plastid	52.5	48.33
Solyc01g007760.2.1	Tomato	plastid	52.05	47.81
CDX92373	Canola	nucleus	46.36	46.05
CDX98588	Canola	nucleus	46.14	45.82
Bra002398.1-P	Field mustard	nucleus	46.14	45.82
AT5G22220.2	Thale cress	cytosol	47.73	44.78
CDX70990	Canola	nucleus	46.14	44.23
Bra006615.1-P	Field mustard	nucleus	45.68	43.41
Bra023047.1-P	Field mustard	plastid	46.14	43.28
CDX84581	Canola	plastid	45.23	42.89
Bra005305.1-P	Field mustard	plastid	46.82	42.83
CDX84164	Canola	plastid	46.59	42.53
Bra017268.1-P	Field mustard	plastid	47.05	42.51
CDY43755	Canola	plastid	47.05	42.33
CDX88807	Canola	cytosol	45.91	41.82
CDX75078	Canola	plastid	47.05	38.76
CDX79651	Canola	plastid	45.0	38.15
GSMUA_Achr4P17950_001	Banana	nucleus	34.77	37.87
AT2G36010.2	Thale cress	plastid	42.73	36.58
KRH26172	Soybean	nucleus	14.55	34.04
PGSC0003DMT400013986	Potato	cytosol	7.27	32.65
Solyc06g074010.2.1	Tomato	nucleus	49.77	25.86

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	InterPro:E2F	InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB
InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr10G15780_001	EnsemblPlants:GSMUA_Achr10P15780_001	EnsemblPlants:GSMUA_Achr10T15780_001	InterPro:IPR036388
UniProt:M0RIK3	PFAM:PF02319	PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF72	SMART:SM01372
SUPFAM:SSF144074	SUPFAM:SSF46785	UniParc:UPI000294E4E1	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg

Description

E2F family transcription factor protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G15780_001]

Coordinates

chr10:-:23585870..23590337

Molecular Weight (calculated)

48952.2 Da

IEP (calculated)

5.131

GRAVY (calculated)

-0.412

Length

440 amino acids

Sequence
(BLAST)

001: MSSIQAAGKQ PAQQPGQMFQ PSKQCLPFAS SRPPFVLLDG HQGFSAAVGR SGGGDDMADA LVIKTPLKRK SVQEDNEAKV LHERATSTGY AVGFTSPLLT
101: PVSEKVRKTY SKSKISKHSK SSTQTLLSYA GSPPGNNLTP VGNSRYDSSL GLLTKKFINL LRHAQDGILD LNKATEILKV QKRRIYDITN VLEGIGLVEK
201: TLKNRISWKG LDDMGPVEVD DDASILQEEI DKLTLEECRL DELISQMQER LRDLSEDESN HKWLYVTKDD ISHLPCFQNK TLIAIKAPHG TTLEVPDPDE
301: AEEYPQRRYR IVLRSTMGAI DVYLVSQFED KYEGMSGVEM PPKVLPISNS GSVENYMVPF VTEESRGNGM EVDIQHSERI WSDVNSSRDF DGGMMKIVPS
401: DIDTEADYWL LSDAGASITD MWKTACILSK TLLSFFYVLC

Best Arabidopsis Sequence Match ( AT5G22220.3 )
(BLAST)

001: MSEEVPQQFP SSKRQLHPSL SSMKPPLVAP GEYHRFDAAE TRGGGAVADQ VVSDAIVIKS TLKRKTDLVN QIVEVNELNT GVLQTPVSGK GGKAKKTSRS
101: AKSNKSGTLA SGSNAGSPGN NFAQAGTCRY DSSLGLLTKK FINLIKQAED GILDLNKAAD TLEVQKRRIY DITNVLEGIG LIEKTLKNRI QWKGLDVSKP
201: GETIESIANL QDEVQNLAAE EARLDDQIRE SQERLTSLSE DENNKRLLFV TENDIKNLPC FQNKTLIAVK APHGTTLEVP DPDEAGGYQR RYRIILRSTM
301: GPIDVYLVSQ FEESFEDIPQ ADEPSNVPDE PSNVPDVPSN LPSTSGLPEN HDVSMPMKEE STERNMETQE VDDTQRVYSD IESHDFVDGI MKIVPPDLDM
401: GVDYWFRSEV GEVSITDMWP DEYWNQMITF DQDHAGPSDN KILEQPQTPS SPTPEESTAT RSPTGS

Arabidopsis Description

E2FBTranscription factor E2FB [Source:UniProtKB/Swiss-Prot;Acc:Q9FV71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.