Factsheet for Solyc01g007760.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042347	Potato	plastid	97.91	98.12
VIT_08s0007g02510.t01	Wine grape	plastid	65.76	67.6
KRH72218	Soybean	nucleus	61.38	62.82
KRH32815	Soybean	nucleus	60.13	61.8
Solyc11g068800.1.1	Tomato	mitochondrion, nucleus	56.16	59.91
OQU78759	Sorghum	plastid	44.89	56.88
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	48.43	56.72
GSMUA_Achr5P17430_001	Banana	plastid	25.05	56.6
Os04t0416100-01	Rice	nucleus	37.37	56.11
GSMUA_Achr2P20420_001	Banana	nucleus	48.85	55.98
TraesCS5B01G125100.1	Wheat	cytosol	51.36	55.41
GSMUA_Achr6P07100_001	Banana	mitochondrion	54.7	55.27
TraesCS5A01G125900.3	Wheat	cytosol	51.15	55.18
TraesCS5D01G133600.1	Wheat	cytosol	51.15	55.18
Os12t0158800-01	Rice	nucleus	50.73	54.48
Zm00001d023465_P002	Maize	cytosol	51.15	53.85
CDX84581	Canola	plastid	51.57	53.23
Bra005305.1-P	Field mustard	plastid	53.24	53.01
Bra023047.1-P	Field mustard	plastid	51.77	52.88
CDX84164	Canola	plastid	52.82	52.49
Bra017268.1-P	Field mustard	plastid	53.24	52.36
GSMUA_Achr10P...	Banana	nucleus, plastid	47.81	52.05
CDY43755	Canola	plastid	53.03	51.94
HORVU5Hr1G040190.4	Barley	plastid	51.36	50.93
TraesCS6A01G195500.2	Wheat	mitochondrion, plastid	48.64	50.87
TraesCS6D01G182600.1	Wheat	mitochondrion, plastid	48.43	50.66
TraesCS6B01G233700.2	Wheat	mitochondrion, plastid	48.43	50.66
HORVU0Hr1G038470.7	Barley	mitochondrion, plastid	48.02	50.22
Os02t0537500-01	Rice	mitochondrion	49.69	50.11
Zm00001d050664_P002	Maize	mitochondrion, plastid	39.25	49.47
Zm00001d016737_P002	Maize	mitochondrion, plastid	47.39	48.71
CDX75078	Canola	plastid	53.24	47.75
CDX79651	Canola	plastid	50.1	46.24
AT2G36010.2	Thale cress	plastid	49.06	45.72
TraesCS2A01G297400.1	Wheat	nucleus	43.63	45.63
TraesCS2B01G313600.2	Wheat	nucleus	43.22	45.3
TraesCS2D01G295300.2	Wheat	mitochondrion	42.59	44.54
OQU81541	Sorghum	nucleus	42.38	44.42
OQU85083	Sorghum	mitochondrion, plastid	43.63	44.37
Zm00001d003755_P001	Maize	nucleus	33.19	43.32
HORVU2Hr1G073750.2	Barley	plastid	41.96	36.35
Solyc04g081350.2.1	Tomato	plastid	29.23	35.26
Solyc06g074010.2.1	Tomato	nucleus	52.4	29.63

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	ncoils:Coil	InterPro:E2F	InterPro:E2F-DP_heterodim
InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005667	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR036388	UniProt:K4ASX4	PFAM:PF02319
PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF72	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785
EnsemblPlantsGene:Solyc01g007760.2	EnsemblPlants:Solyc01g007760.2.1	UniParc:UPI0002762B0A	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	:

Description

Transcription factor E2FA [Source:Projected from Arabidopsis thaliana (AT2G36010) UniProtKB/Swiss-Prot;Acc:Q9FNY0]

Coordinates

chr1:+:1916300..1921403

Molecular Weight (calculated)

52587.3 Da

IEP (calculated)

4.731

GRAVY (calculated)

-0.634

Length

479 amino acids

Sequence
(BLAST)

001: MTGSSASTGG AAPPTAQSSS AVVNGGGRSQ ISHPIKRYLP FASMRPPFVT PEDYHRFSIP GVDSRIGSAS LQPEAIVVKS PALKRKTGYI KEVESSDWTA
101: NSGYADVANS PLGTPVSGKG GRAHGRSRAT KNNKSGPQTP VYNAGSPSPL TPASCRYDSS LGLLTKKFIN LIKHAEDGML DLNQAADTLE VQKRRIYDIT
201: NVLEGIGLIE KKLKNRIQWK GVESSRPGEV DNDASILKAE TDRLSVEERR LDERIREMQE KLRDMSEDEN NQRWLFVTEE DIKSLPCFQN ETLIAVKAPH
301: GTTLEVPDPD EAVDYPQRRY RIILRSTMGP IDVYLVSQFE EKFEEMNGVE PPTTIPVASS SGSKDYPTME ISTVSNSVTE NEGQTHNVDQ LSSDLGTSQE
401: YNGGMMKILP SDVDNDSDYW LLSDANVSIT DMWKTDSTVE WDGETLLHDF GIDDLGTPRA HTPPSTNADV PDPMNVPPR

Best Arabidopsis Sequence Match ( AT2G36010.1 )
(BLAST)

001: MSGVVRSSPG SSQPPPPPPH HPPSSPVPVT STPVIPPIRR HLAFASTKPP FHPSDDYHRF NPSSLSNNND RSFVHGCGVV DREEDAVVVR SPSRKRKATM
101: DMVVAPSNNG FTSSGFTNIP SSPCQTPRKG GRVNIKSKAK GNKSTPQTPI STNAGSPITL TPSGSCRYDS SLGLLTKKFV NLIKQAKDGM LDLNKAAETL
201: EVQKRRIYDI TNVLEGIDLI EKPFKNRILW KGVDACPGDE DADVSVLQAE IENLALEEQA LDNQIRQTEE RLRDLSENEK NQKWLFVTEE DIKSLPGFQN
301: QTLIAVKAPH GTTLEVPDPD EAADHPQRRY RIILRSTMGP IDVYLVSEFE GKFEDTNGSG AAPPACLPIA SSSGSTGHHD IEALTVDNPE TAIVSHDHPH
401: PQPGDTSDLN YLQEQVGGML KITPSDVEND ESDYWLLSNA EISMTDIWKT DSGIDWDYGI ADVSTPPPGM GEIAPTAVDS TPR

Arabidopsis Description

E2F3E2F transcription factor 3 [Source:UniProtKB/TrEMBL;Acc:F4ILT1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.