CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84581	Canola	plastid	79.38	88.79
CDX84164	Canola	plastid	70.33	75.73
CDY43755	Canola	plastid	69.36	73.62
CDX75078	Canola	plastid	71.68	69.66
AT2G36010.2	Thale cress	plastid	60.31	60.89
GSMUA_Achr5P17430_001	Banana	plastid	22.35	54.72
VIT_08s0007g02510.t01	Wine grape	plastid	47.59	53.0
KRH72218	Soybean	nucleus	46.24	51.28
KRH32815	Soybean	nucleus	45.47	50.64
OQU78759	Sorghum	plastid	36.8	50.53
Os04t0416100-01	Rice	nucleus	30.83	50.16
Solyc01g007760.2.1	Tomato	plastid	46.24	50.1
PGSC0003DMT400042347	Potato	plastid	46.05	50.0
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	38.34	48.66
GSMUA_Achr2P20420_001	Banana	nucleus	37.57	46.65
Zm00001d050664_P002	Maize	mitochondrion, plastid	34.1	46.58
TraesCS5D01G133600.1	Wheat	cytosol	39.5	46.17
TraesCS5B01G125100.1	Wheat	cytosol	39.31	45.95
CDX98588	Canola	nucleus	39.11	45.82
Os12t0158800-01	Rice	nucleus	39.31	45.74
TraesCS5A01G125900.3	Wheat	cytosol	39.11	45.72
CDX92373	Canola	nucleus	38.92	45.6
GSMUA_Achr6P07100_001	Banana	mitochondrion	41.62	45.57
TraesCS6A01G195500.2	Wheat	mitochondrion, plastid	39.88	45.2
TraesCS6B01G233700.2	Wheat	mitochondrion, plastid	39.88	45.2
HORVU0Hr1G038470.7	Barley	mitochondrion, plastid	39.88	45.2
GSMUA_Achr10P...	Banana	nucleus, plastid	38.15	45.0
TraesCS6D01G182600.1	Wheat	mitochondrion, plastid	39.69	44.98
Os02t0537500-01	Rice	mitochondrion	41.04	44.84
Zm00001d023465_P002	Maize	cytosol	38.73	44.18
CDX70990	Canola	nucleus	38.54	43.57
Zm00001d003755_P001	Maize	nucleus	30.06	42.51
TraesCS2B01G313600.2	Wheat	nucleus	37.38	42.45
Zm00001d016737_P002	Maize	mitochondrion, plastid	37.96	42.27
HORVU5Hr1G040190.4	Barley	plastid	39.31	42.24
TraesCS2A01G297400.1	Wheat	nucleus	37.19	42.14
CDX88807	Canola	cytosol	38.73	41.61
TraesCS2D01G295300.2	Wheat	mitochondrion	36.61	41.48
OQU85083	Sorghum	mitochondrion, plastid	36.03	39.7
OQU81541	Sorghum	nucleus	34.87	39.61
CDY16998	Canola	nucleus	27.75	39.24
CDY17797	Canola	nucleus	27.36	37.67
HORVU2Hr1G073750.2	Barley	plastid	34.68	32.55

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	GO:A0A078CR63	EnsemblPlants:CDX79651	ProteinID:CDX79651
ProteinID:CDX79651.1	ncoils:Coil	InterPro:E2F	InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom
GO:GO:0003674	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005667	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00132443001	InterPro:IPR036388	PFAM:PF02319
PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF72	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785
UniParc:UPI0004EEF2B0	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

BnaC03g19870D

Coordinates

chrLK031818:+:1393412..1396213

Molecular Weight (calculated)

57238.0 Da

IEP (calculated)

4.460

GRAVY (calculated)

-0.463

Length

519 amino acids

Sequence
(BLAST)

001: MSGGVRPSPG HSQPPPSNPV VPPIRRHLAF ASTKPPFHPS DYRRFTPSYV TNNDSSSLCG IVDREEDAVV LRSPVSSPRY IQFTCLICYG PVMRFWILYT
101: IYMTGPDCLF TYANCYQNNV EYLQSRKRKS MMDVVTTTTT TTSNSNGFTS SGSTSIHNSP CLTPVSAKGG RVNTKSRAKG TQSVPQTPIS NAASPATLTP
201: SGSCRYDSSL GLLTKRFVNL IKQAEDGMLD LNKAAEALEV QKRRIYDITN VLEGIDLIEK PFKNRILWKG VDASRPGDVD ADVSVLQAEI ENLNLQEQAL
301: DNQIRETEER LRDLSENEKN QKWLFVTEED IKSLPGFQNQ TLIAVKAPHG TTLEVPDPDE AGELPQRRHR IILRSTMGPI DVYLVSEFED TNGDVAPPAC
401: LPIASCSGST ENNEIEALTI DNTETASELQ MSQDQAHAQP GDTSDLNYLQ EQVGGMLKIT LSDIENDDTD YWLLSNAEIS MTDIWNTDSG IDWDYGIADV
501: TPPPVMSEIA SADIDSKPT

Best Arabidopsis Sequence Match ( AT2G36010.1 )
(BLAST)

001: MSGVVRSSPG SSQPPPPPPH HPPSSPVPVT STPVIPPIRR HLAFASTKPP FHPSDDYHRF NPSSLSNNND RSFVHGCGVV DREEDAVVVR SPSRKRKATM
101: DMVVAPSNNG FTSSGFTNIP SSPCQTPRKG GRVNIKSKAK GNKSTPQTPI STNAGSPITL TPSGSCRYDS SLGLLTKKFV NLIKQAKDGM LDLNKAAETL
201: EVQKRRIYDI TNVLEGIDLI EKPFKNRILW KGVDACPGDE DADVSVLQAE IENLALEEQA LDNQIRQTEE RLRDLSENEK NQKWLFVTEE DIKSLPGFQN
301: QTLIAVKAPH GTTLEVPDPD EAADHPQRRY RIILRSTMGP IDVYLVSEFE GKFEDTNGSG AAPPACLPIA SSSGSTGHHD IEALTVDNPE TAIVSHDHPH
401: PQPGDTSDLN YLQEQVGGML KITPSDVEND ESDYWLLSNA EISMTDIWKT DSGIDWDYGI ADVSTPPPGM GEIAPTAVDS TPR

Arabidopsis Description

E2F3E2F transcription factor 3 [Source:UniProtKB/TrEMBL;Acc:F4ILT1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.