CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75078	Canola	plastid	95.23	85.96
CDX84581	Canola	plastid	78.42	81.47
CDY43755	Canola	plastid	79.88	78.73
CDX79651	Canola	plastid	75.73	70.33
AT2G36010.2	Thale cress	plastid	67.43	63.23
VIT_08s0007g02510.t01	Wine grape	plastid	55.6	57.51
GSMUA_Achr5P17430_001	Banana	plastid	24.07	54.72
KRH32815	Soybean	nucleus	52.49	54.29
KRH72218	Soybean	nucleus	52.49	54.06
Solyc01g007760.2.1	Tomato	plastid	52.49	52.82
PGSC0003DMT400042347	Potato	plastid	52.28	52.72
OQU78759	Sorghum	plastid	41.29	52.65
Os04t0416100-01	Rice	nucleus	33.4	50.47
GSMUA_Achr2P20420_001	Banana	nucleus	43.15	49.76
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	41.7	49.14
TraesCS5B01G125100.1	Wheat	cytosol	44.61	48.42
TraesCS5A01G125900.3	Wheat	cytosol	44.4	48.2
TraesCS5D01G133600.1	Wheat	cytosol	44.4	48.2
Os12t0158800-01	Rice	nucleus	44.4	47.98
Os02t0537500-01	Rice	mitochondrion	46.89	47.58
CDX98588	Canola	nucleus	43.57	47.4
TraesCS6B01G233700.2	Wheat	mitochondrion, plastid	45.02	47.38
Zm00001d050664_P002	Maize	mitochondrion, plastid	37.34	47.37
GSMUA_Achr6P07100_001	Banana	mitochondrion	46.47	47.26
CDX92373	Canola	nucleus	43.36	47.18
TraesCS6A01G195500.2	Wheat	mitochondrion, plastid	44.81	47.16
TraesCS6D01G182600.1	Wheat	mitochondrion, plastid	44.81	47.16
HORVU0Hr1G038470.7	Barley	mitochondrion, plastid	44.61	46.94
GSMUA_Achr10P...	Banana	nucleus, plastid	42.53	46.59
Zm00001d023465_P002	Maize	cytosol	43.57	46.15
Zm00001d016737_P002	Maize	mitochondrion, plastid	44.19	45.71
CDX70990	Canola	nucleus	42.74	44.88
HORVU5Hr1G040190.4	Barley	plastid	44.19	44.1
TraesCS2B01G313600.2	Wheat	nucleus	41.29	43.54
TraesCS2A01G297400.1	Wheat	nucleus	41.29	43.45
CDX88807	Canola	cytosol	42.95	42.86
TraesCS2D01G295300.2	Wheat	mitochondrion	40.25	42.36
OQU85083	Sorghum	mitochondrion, plastid	41.08	42.04
Zm00001d003755_P001	Maize	nucleus	31.33	41.14
OQU81541	Sorghum	nucleus	38.38	40.48
CDY16998	Canola	nucleus	29.88	39.24
CDY17797	Canola	nucleus	29.05	37.14
HORVU2Hr1G073750.2	Barley	plastid	38.8	33.82

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	GO:A0A078D708	EnsemblPlants:CDX84164	ProteinID:CDX84164
ProteinID:CDX84164.1	ncoils:Coil	InterPro:E2F	InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom
GO:GO:0003674	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005667	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00141197001	InterPro:IPR036388	PFAM:PF02319
PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF72	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785
UniParc:UPI0004EED979	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

BnaC04g09260D

Coordinates

chrLK031836:-:382567..385758

Molecular Weight (calculated)

52514.4 Da

IEP (calculated)

4.701

GRAVY (calculated)

-0.550

Length

482 amino acids

Sequence
(BLAST)

001: MSGGVRSSPG SSRQPPPPPQ HPAASVPVVP PIRRHLAFAS TKPPFHPSDN YHRFTPSHLA NNLVNGCGGL VDREEDAVVL RSPSRKRKST MDVVTTTTTS
101: TSNGFTSSDG FTSSPCRTPV SAKGDRVNIK SKAKGNQSIP QTPISNIGSP ATLTPSGSCR YDSSLGLLTK KFVNLIKQAK DGMLDLNKAA ETLEVQKRRI
201: YDITNVLEGI DLIEKPLKNR ILWKGVDALR PGDVDADVSD VQAEIENLSL EEQALDNQIR ETEQRLRDLS ENEKNQKWLF VTEEDIKSLP GFQNQTLIAV
301: KAPHGTTLEV PDPDEAVGHP QRRYRIILRS TMGPIDVYLV SEFEEKFEDT NGPAAPPPPP PCLPIASCSG STENHNIEAL TVDNTGTAVE DQLSQTHANA
401: QPGETSDLNY LEEQVGGMLK ITPSEVENDD TDYWLLSNAD ISMTDIWKTD SGIDWDYGIA DVSTPPPIIG DISPTAIDSI PR

Best Arabidopsis Sequence Match ( AT2G36010.1 )
(BLAST)

001: MSGVVRSSPG SSQPPPPPPH HPPSSPVPVT STPVIPPIRR HLAFASTKPP FHPSDDYHRF NPSSLSNNND RSFVHGCGVV DREEDAVVVR SPSRKRKATM
101: DMVVAPSNNG FTSSGFTNIP SSPCQTPRKG GRVNIKSKAK GNKSTPQTPI STNAGSPITL TPSGSCRYDS SLGLLTKKFV NLIKQAKDGM LDLNKAAETL
201: EVQKRRIYDI TNVLEGIDLI EKPFKNRILW KGVDACPGDE DADVSVLQAE IENLALEEQA LDNQIRQTEE RLRDLSENEK NQKWLFVTEE DIKSLPGFQN
301: QTLIAVKAPH GTTLEVPDPD EAADHPQRRY RIILRSTMGP IDVYLVSEFE GKFEDTNGSG AAPPACLPIA SSSGSTGHHD IEALTVDNPE TAIVSHDHPH
401: PQPGDTSDLN YLQEQVGGML KITPSDVEND ESDYWLLSNA EISMTDIWKT DSGIDWDYGI ADVSTPPPGM GEIAPTAVDS TPR

Arabidopsis Description

E2F3E2F transcription factor 3 [Source:UniProtKB/TrEMBL;Acc:F4ILT1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.