Factsheet for TraesCS2A01G297400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G313600.2	Wheat	nucleus	97.82	98.03
TraesCS2D01G295300.2	Wheat	mitochondrion	94.76	94.76
HORVU2Hr1G073750.2	Barley	plastid	83.62	69.26
Os04t0416100-01	Rice	nucleus	46.29	66.46
TraesCS6A01G195500.2	Wheat	mitochondrion, plastid	56.33	56.33
OQU81541	Sorghum	nucleus	52.62	52.74
Zm00001d003755_P001	Maize	nucleus	40.83	50.95
GSMUA_Achr5P17430_001	Banana	plastid	23.58	50.94
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	43.67	48.9
GSMUA_Achr6P07100_001	Banana	mitochondrion	50.0	48.31
VIT_06s0080g01110.t01	Wine grape	nucleus	46.07	47.31
TraesCS5A01G125900.3	Wheat	cytosol	45.63	47.07
VIT_08s0007g02510.t01	Wine grape	plastid	47.6	46.78
KRH30372	Soybean	nucleus	46.29	46.09
KRH25298	Soybean	nucleus	44.76	45.56
KRH72218	Soybean	nucleus	44.98	44.02
KRH32815	Soybean	nucleus	44.54	43.78
PGSC0003DMT400042347	Potato	plastid	45.63	43.72
Solyc01g007760.2.1	Tomato	plastid	45.63	43.63
CDX84581	Canola	plastid	43.23	42.67
Bra023047.1-P	Field mustard	plastid	43.67	42.64
Solyc11g068800.1.1	Tomato	mitochondrion, nucleus	41.27	42.09
Bra017268.1-P	Field mustard	plastid	44.54	41.89
CDY43755	Canola	plastid	44.32	41.51
PGSC0003DMT400015188	Potato	nucleus	39.96	41.31
CDX84164	Canola	plastid	43.45	41.29
Bra005305.1-P	Field mustard	plastid	43.01	40.96
PGSC0003DMT400050512	Potato	mitochondrion, nucleus	40.17	40.62
CDX98588	Canola	nucleus	38.65	39.95
CDX92373	Canola	nucleus	38.43	39.73
Bra002398.1-P	Field mustard	nucleus	38.21	39.5
CDX70990	Canola	nucleus	39.08	39.0
Bra006615.1-P	Field mustard	nucleus	38.86	38.44
AT5G22220.2	Thale cress	cytosol	39.08	38.17
CDX79651	Canola	plastid	42.14	37.19
CDX75078	Canola	plastid	43.23	37.08
CDX88807	Canola	cytosol	38.65	36.65
AT2G36010.2	Thale cress	plastid	39.74	35.41
KRH26172	Soybean	nucleus	12.66	30.85
TraesCS2A01G031800.1	Wheat	plastid	28.17	28.54
PGSC0003DMT400013986	Potato	cytosol	5.68	26.53
Solyc06g074010.2.1	Tomato	nucleus	39.52	21.37

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	ncoils:Coil	InterPro:E2F	InterPro:E2F-DP_heterodim
InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005667	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR036388
PFAM:PF02319	PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF45	SMART:SM01372	SUPFAM:SSF144074
SUPFAM:SSF46785	EnsemblPlantsGene:TraesCS2A01G297400	EnsemblPlants:TraesCS2A01G297400.1	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	TIGR:cd14660
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2A:-:511117461..511121687

Molecular Weight (calculated)

49963.0 Da

IEP (calculated)

5.003

GRAVY (calculated)

-0.501

Length

458 amino acids

Sequence
(BLAST)

001: MSGGGRPQAA QQIVQSVQKC VPLAPERPPF AVPAEYHRFP LPPSSSAPAA ASRGSAGGDV EEGIVIRMPL KRKAPCGESD AIESTEWMIT SPGFTEGVSS
101: PHMTPVSGKA ARTYKSKAKG SKDGLQTPIS NAGSPGTPLT PGSSRAEHSL GELTKKFISL LKQAEDGILD LNHVAEILVV KKRRIYDITN VLEGIGLLEK
201: KLKNRIRWRG LDDSGANLDN EISVLETELE NLKLQEKALD NRISEMHEKV RELTEEENNQ RWLYLTEDDI KGLPCFQNET LIAIKAPHGT TLEVPDPDEA
301: GDYVQRRYTI VIRSTMGSID LYLVSKFEEN MEELVGVTTP PRHANVAEPA STDGFIATEA GQSSRSKDKL PNIQHIHKTP DLNAQNFGGM AKITPEFDVD
401: ADYYLLTDGD ASSITDMWRT APEVQWDQFL AEEATAPRTP QQQPAVVSKS TAVGPTCG

Best Arabidopsis Sequence Match ( AT2G36010.1 )
(BLAST)

001: MSGVVRSSPG SSQPPPPPPH HPPSSPVPVT STPVIPPIRR HLAFASTKPP FHPSDDYHRF NPSSLSNNND RSFVHGCGVV DREEDAVVVR SPSRKRKATM
101: DMVVAPSNNG FTSSGFTNIP SSPCQTPRKG GRVNIKSKAK GNKSTPQTPI STNAGSPITL TPSGSCRYDS SLGLLTKKFV NLIKQAKDGM LDLNKAAETL
201: EVQKRRIYDI TNVLEGIDLI EKPFKNRILW KGVDACPGDE DADVSVLQAE IENLALEEQA LDNQIRQTEE RLRDLSENEK NQKWLFVTEE DIKSLPGFQN
301: QTLIAVKAPH GTTLEVPDPD EAADHPQRRY RIILRSTMGP IDVYLVSEFE GKFEDTNGSG AAPPACLPIA SSSGSTGHHD IEALTVDNPE TAIVSHDHPH
401: PQPGDTSDLN YLQEQVGGML KITPSDVEND ESDYWLLSNA EISMTDIWKT DSGIDWDYGI ADVSTPPPGM GEIAPTAVDS TPR

Arabidopsis Description

E2F3E2F transcription factor 3 [Source:UniProtKB/TrEMBL;Acc:F4ILT1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.