CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023047.1-P	Field mustard	plastid	97.41	96.38
CDX79651	Canola	plastid	88.79	79.38
CDX84164	Canola	plastid	81.47	78.42
CDY43755	Canola	plastid	79.96	75.87
CDX75078	Canola	plastid	82.11	71.35
AT2G36010.2	Thale cress	plastid	68.75	62.06
VIT_08s0007g02510.t01	Wine grape	plastid	56.03	55.79
GSMUA_Achr5P17430_001	Banana	plastid	25.22	55.19
KRH72218	Soybean	nucleus	53.66	53.21
KRH32815	Soybean	nucleus	52.8	52.58
Solyc01g007760.2.1	Tomato	plastid	53.23	51.57
PGSC0003DMT400042347	Potato	plastid	53.02	51.46
Os04t0416100-01	Rice	nucleus	35.13	51.1
OQU78759	Sorghum	plastid	41.38	50.79
Zm00001d050664_P002	Maize	mitochondrion, plastid	39.22	47.89
TraesCS5D01G133600.1	Wheat	cytosol	45.69	47.75
TraesCS5B01G125100.1	Wheat	cytosol	45.69	47.75
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	42.03	47.68
TraesCS5A01G125900.3	Wheat	cytosol	45.47	47.52
CDX98588	Canola	nucleus	45.26	47.4
GSMUA_Achr2P20420_001	Banana	nucleus	42.67	47.37
CDX92373	Canola	nucleus	45.04	47.18
Os12t0158800-01	Rice	nucleus	45.04	46.86
GSMUA_Achr6P07100_001	Banana	mitochondrion	47.2	46.2
TraesCS6B01G233700.2	Wheat	mitochondrion, plastid	45.47	46.07
TraesCS6D01G182600.1	Wheat	mitochondrion, plastid	45.26	45.85
TraesCS6A01G195500.2	Wheat	mitochondrion, plastid	45.26	45.85
HORVU0Hr1G038470.7	Barley	mitochondrion, plastid	45.04	45.63
Zm00001d023465_P002	Maize	cytosol	44.4	45.27
GSMUA_Achr10P...	Banana	nucleus, plastid	42.89	45.23
Os02t0537500-01	Rice	mitochondrion	46.12	45.05
CDX70990	Canola	nucleus	44.4	44.88
HORVU5Hr1G040190.4	Barley	plastid	45.47	43.69
TraesCS2B01G313600.2	Wheat	nucleus	42.89	43.54
Zm00001d016737_P002	Maize	mitochondrion, plastid	43.53	43.35
TraesCS2A01G297400.1	Wheat	nucleus	42.67	43.23
CDX88807	Canola	cytosol	44.83	43.06
TraesCS2D01G295300.2	Wheat	mitochondrion	42.03	42.58
Zm00001d003755_P001	Maize	nucleus	33.41	42.23
OQU85083	Sorghum	mitochondrion, plastid	41.38	40.76
CDY16998	Canola	nucleus	32.11	40.6
OQU81541	Sorghum	nucleus	39.87	40.48
CDY17797	Canola	nucleus	31.25	38.46
HORVU2Hr1G073750.2	Barley	plastid	40.52	34.0

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	GO:A0A078D5I3	EnsemblPlants:CDX84581	ProteinID:CDX84581
ProteinID:CDX84581.1	ncoils:Coil	InterPro:E2F	InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom
GO:GO:0003674	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005667	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00141838001	InterPro:IPR036388	PFAM:PF02319
PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF72	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785
UniParc:UPI0004EEFE42	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

BnaA03g16490D

Coordinates

chrLK031838:-:169442..172516

Molecular Weight (calculated)

50713.1 Da

IEP (calculated)

4.658

GRAVY (calculated)

-0.574

Length

464 amino acids

Sequence
(BLAST)

001: MSGGVRPSPG HSQPPPSSSN PVVPPIRRHL AFASTKPPFH PSDYRRFTPS YDSSSLCGIV DREEDAVVLR SPSRKRKSMM DVVTTNSNGF TSSGSTSIHN
101: SPCHTPVSAK GGRVNTKSRA KGTQSVPQTP ISNAGSPATL TPSGSCRYDS SLGLLTKKCV NLIKQAEDGM LDLNKAAEVL EVQKRRIYDI TNVLEGIDLI
201: EKPFKNRILW KGVDASRPGD VDADVAVLQA EIENLNLEEQ ALDSQIRETE ERLRDLSENE KNQKWLFVTE EDIKSLPGFQ NQTLIAVKAP HGTTLEVPDP
301: DEAGDVPQRR YRIILRSTMG PIDVYLVSEF ENTNGSVAPP ACLPPIASCS GSTENHDIEA LTRDNTETAI EHQMSQDHAH AQPGDTSDLN YLQEQVGGML
401: KITPSDIEND DTDYWLLSNA EISMTDIWNT DSGIDWDYGI ADVSTPPPVM GEEIAPSAID SKPR

Best Arabidopsis Sequence Match ( AT2G36010.1 )
(BLAST)

001: MSGVVRSSPG SSQPPPPPPH HPPSSPVPVT STPVIPPIRR HLAFASTKPP FHPSDDYHRF NPSSLSNNND RSFVHGCGVV DREEDAVVVR SPSRKRKATM
101: DMVVAPSNNG FTSSGFTNIP SSPCQTPRKG GRVNIKSKAK GNKSTPQTPI STNAGSPITL TPSGSCRYDS SLGLLTKKFV NLIKQAKDGM LDLNKAAETL
201: EVQKRRIYDI TNVLEGIDLI EKPFKNRILW KGVDACPGDE DADVSVLQAE IENLALEEQA LDNQIRQTEE RLRDLSENEK NQKWLFVTEE DIKSLPGFQN
301: QTLIAVKAPH GTTLEVPDPD EAADHPQRRY RIILRSTMGP IDVYLVSEFE GKFEDTNGSG AAPPACLPIA SSSGSTGHHD IEALTVDNPE TAIVSHDHPH
401: PQPGDTSDLN YLQEQVGGML KITPSDVEND ESDYWLLSNA EISMTDIWKT DSGIDWDYGI ADVSTPPPGM GEIAPTAVDS TPR

Arabidopsis Description

E2F3E2F transcription factor 3 [Source:UniProtKB/TrEMBL;Acc:F4ILT1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.