CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88807	Canola	cytosol	93.46	88.82
CDX98588	Canola	nucleus	82.79	85.78
CDX92373	Canola	nucleus	82.14	85.1
AT5G22220.2	Thale cress	cytosol	79.3	77.61
VIT_06s0080g01110.t01	Wine grape	nucleus	53.81	55.38
KRH25298	Soybean	nucleus	52.29	53.33
KRH30372	Soybean	nucleus	53.16	53.04
Solyc11g068800.1.1	Tomato	mitochondrion, nucleus	51.63	52.78
PGSC0003DMT400015188	Potato	nucleus	50.33	52.14
PGSC0003DMT400050512	Potato	mitochondrion, nucleus	50.54	51.21
GSMUA_Achr5P17430_001	Banana	plastid	23.53	50.94
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	44.66	50.12
Os04t0416100-01	Rice	nucleus	33.99	48.9
OQU78759	Sorghum	plastid	38.56	46.83
GSMUA_Achr10P...	Banana	nucleus, plastid	44.23	46.14
GSMUA_Achr6P07100_001	Banana	mitochondrion	47.28	45.78
GSMUA_Achr2P20420_001	Banana	nucleus	41.61	45.69
CDX84581	Canola	plastid	44.88	44.4
HORVU0Hr1G038470.7	Barley	mitochondrion, plastid	44.01	44.1
TraesCS6B01G233700.2	Wheat	mitochondrion, plastid	44.01	44.1
Zm00001d050664_P002	Maize	mitochondrion, plastid	36.38	43.95
Os12t0158800-01	Rice	nucleus	42.7	43.95
TraesCS6A01G195500.2	Wheat	mitochondrion, plastid	43.79	43.89
TraesCS6D01G182600.1	Wheat	mitochondrion, plastid	43.79	43.89
Os02t0537500-01	Rice	mitochondrion	44.66	43.16
TraesCS5B01G125100.1	Wheat	cytosol	41.39	42.79
CDX84164	Canola	plastid	44.88	42.74
TraesCS5A01G125900.3	Wheat	cytosol	41.18	42.57
TraesCS5D01G133600.1	Wheat	cytosol	40.74	42.12
Zm00001d023465_P002	Maize	cytosol	41.39	41.76
Zm00001d016737_P002	Maize	mitochondrion, plastid	42.27	41.63
CDY43755	Canola	plastid	44.01	41.31
TraesCS2D01G295300.2	Wheat	mitochondrion	39.87	39.96
TraesCS2B01G313600.2	Wheat	nucleus	39.0	39.17
TraesCS2A01G297400.1	Wheat	nucleus	39.0	39.08
Zm00001d003755_P001	Maize	nucleus	31.15	38.96
CDX75078	Canola	plastid	45.32	38.95
HORVU5Hr1G040190.4	Barley	plastid	40.96	38.92
CDY16998	Canola	nucleus	30.94	38.69
CDX79651	Canola	plastid	43.57	38.54
OQU85083	Sorghum	mitochondrion, plastid	39.22	38.22
OQU81541	Sorghum	nucleus	37.04	37.2
CDY17797	Canola	nucleus	30.5	37.14
HORVU2Hr1G073750.2	Barley	plastid	39.0	32.37
Solyc06g074010.2.1	Tomato	nucleus	49.89	27.04

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	GO:A0A078C2A9	EnsemblPlants:CDX70990	ProteinID:CDX70990
ProteinID:CDX70990.1	ncoils:Coil	InterPro:E2F	InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom
GO:GO:0003674	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005667	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00140919001	InterPro:IPR036388	PFAM:PF02319
PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF72	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785
UniParc:UPI0004EDCB77	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	:	:	:

Description

BnaC03g10740D

Coordinates

chrLK031791:+:3077330..3080839

Molecular Weight (calculated)

50952.2 Da

IEP (calculated)

4.401

GRAVY (calculated)

-0.762

Length

459 amino acids

Sequence
(BLAST)

001: MSDSQQEPEQ HQPPKRQHHP SAASMKPPLV APGEYHRFEP AESRGGPDQV SEAIVIKPSL TDLVNQIYEP SEMNAGVLQT PVTGKGGKAE KSSRSVKSNK
101: TGIQASGFNA GSPGNNIAQA GSCRYDSSLG LLTKKFINLI KQAEDGILDL NKAADTLEVQ KRRIYDITNV LEGIGLIEKT LKNRIQWKGL DVSKPGETME
201: NIANLQDEIQ NLSAEEAKLD DQIRESQERL TSLSEDENNK RFLFVSEDDI KNLPCFQNKT LIAVKAPHGT TLEVPDPDEA GGYPQRRYRI ILRSTMGPID
301: VYLVSQFEER FEDIPNVDEP SNVPSTSGVP ENQDVGVPVK EDSTVKNIET QEVDDTQRVY SDMESQDFVD GIMKIVPPDL DMDVDYWLRS EVGEVSITDM
401: WPNESGPNWN NQMLSFHQGA GPNWNYQMVS YDQGAGTSNT TQEQPQTPSC PKREQSTAT

Best Arabidopsis Sequence Match ( AT5G22220.2 )
(BLAST)

001: MSEEVPQQFP SSKRQLHPSL SSMKPPLVAP GEYHRFDAAE TRGGGAVADQ VVSDAIVIKS TLKRKTDLVN QIVEVNELNT GVLQTPVSGK GGKAKKTSRS
101: AKSNKSGTLA SGSNAGSPGN NFAQAGTCRY DSSLGLLTKK FINLIKQAED GILDLNKAAD TLEVQKRRIY DITNVLEGIG LIEKTLKNRI QWKGLDVSKP
201: GETIESIANL QDEVQNLAAE EARLDDQIRE SQERLTSLSE DENNKRLLFV TENDIKNLPC FQNKTLIAVK APHGTTLEVP DPDEAGGYQR RYRIILRSTM
301: GPIDVYLVSQ FEESFEDIPQ ADEPSNVPDE PSNVPDVPSN LPSTSGLPEN HDVSMPMKEE STERNMETQE VDDTQRVYSD IESHDFVDGI MKIVPPDLDM
401: GVDYWFRSEV GEVSITDMWP DESGPDWNQM ITFDQDHAGP SDNKILEQPQ TPSSPTPEES TATRSPTGS

Arabidopsis Description

E2FBTranscription factor E2FB [Source:UniProtKB/Swiss-Prot;Acc:Q9FV71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.