Factsheet for PGSC0003DMT400015188

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400050512	Potato	mitochondrion, nucleus	69.3	67.77
VIT_06s0080g01110.t01	Wine grape	nucleus	63.66	63.23
KRH30372	Soybean	nucleus	60.72	58.48
KRH25298	Soybean	nucleus	59.37	58.44
GSMUA_Achr5P17430_001	Banana	plastid	25.51	53.3
PGSC0003DMT400042347	Potato	plastid	57.11	52.93
OQU78759	Sorghum	plastid	45.15	52.91
Bra002398.1-P	Field mustard	nucleus	51.47	51.47
CDX98588	Canola	nucleus	51.47	51.47
CDX92373	Canola	nucleus	51.47	51.47
AT5G22220.2	Thale cress	cytosol	53.95	50.96
GSMUA_Achr2P20420_001	Banana	nucleus	48.08	50.96
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	46.95	50.86
CDX70990	Canola	nucleus	52.14	50.33
GSMUA_Achr10P...	Banana	nucleus, plastid	49.66	50.0
Bra006615.1-P	Field mustard	nucleus	51.92	49.68
GSMUA_Achr6P07100_001	Banana	mitochondrion	52.82	49.37
TraesCS5B01G125100.1	Wheat	cytosol	49.44	49.32
Os04t0416100-01	Rice	nucleus	35.44	49.22
TraesCS5D01G133600.1	Wheat	cytosol	49.21	49.1
TraesCS5A01G125900.3	Wheat	cytosol	48.98	48.87
Solyc06g074010.2.1	Tomato	nucleus	92.33	48.29
Os12t0158800-01	Rice	nucleus	48.08	47.76
CDX88807	Canola	cytosol	51.69	47.41
Zm00001d050664_P002	Maize	mitochondrion, plastid	40.63	47.37
Os02t0537500-01	Rice	mitochondrion	49.44	46.11
Zm00001d023465_P002	Maize	cytosol	46.95	45.71
TraesCS6B01G233700.2	Wheat	mitochondrion, plastid	46.95	45.41
TraesCS6D01G182600.1	Wheat	mitochondrion, plastid	46.73	45.2
Zm00001d016737_P002	Maize	mitochondrion, plastid	47.4	45.06
HORVU0Hr1G038470.7	Barley	mitochondrion, plastid	46.5	44.98
TraesCS6A01G195500.2	Wheat	mitochondrion, plastid	46.5	44.98
HORVU5Hr1G040190.4	Barley	plastid	48.76	44.72
Zm00001d003755_P001	Maize	nucleus	35.89	43.32
OQU81541	Sorghum	nucleus	43.79	42.45
OQU85083	Sorghum	mitochondrion, plastid	43.79	41.19
TraesCS2B01G313600.2	Wheat	nucleus	41.76	40.48
TraesCS2A01G297400.1	Wheat	nucleus	41.31	39.96
TraesCS2D01G295300.2	Wheat	mitochondrion	41.08	39.74
PGSC0003DMT400009682	Potato	plastid	30.02	33.25
HORVU2Hr1G073750.2	Barley	plastid	41.08	32.91
PGSC0003DMT400013986	Potato	cytosol	7.22	32.65

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:102578597	MapMan:13.1.2.2	MapMan:15.5.10	ncoils:Coil	InterPro:E2F
InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR036388	UniProt:M1A5L7
PFAM:PF02319	PFAM:PF16421	EnsemblPlantsGene:PGSC0003DMG402005932	PGSC:PGSC0003DMG402005932	EnsemblPlants:PGSC0003DMT400015188	PANTHER:PTHR12081
PANTHER:PTHR12081:SF72	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785	UniParc:UPI0002964B27	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	RefSeq:XP_006361100.1	SEG:seg	:	:	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG402005932]

Coordinates

chr6:+:54615550..54621808

Molecular Weight (calculated)

48523.5 Da

IEP (calculated)

4.389

GRAVY (calculated)

-0.626

Length

443 amino acids

Sequence
(BLAST)

001: MQPNQQQPSK RQLPFTSSKP PLGDYHRLST DPLQPSSQEP EGIVVKSTPL KRKSGTTNYE QGVGAQVAGS GSFNGSSPMQ TPISGKDGNS QKAPRTSKAR
101: SAAQATSSLG SPSGNNVTPV GPCRYDNSLG LLTKKFINLL KHAKDGILDL NKAADTLEVQ KRRIYDITNV LEGIGLIEKK LKNMIQWKGL DVLRPGEVDE
201: SVTSLQAGVE NLTIEESRLD EQIRKMEERL RDLSGDENNK RWLFVTEDDI KSLPCLQNDT LIAIKAPHGT SLEVPDPDEA VDYPQRRYRI VFRSTMGPID
301: VYLVSKFEEK FEEINTVEEP STMPPTSGFI ENETVTLPVD DGGGVGVGME EQENQRECPD AGTSQDFVSG IVKIVPDVDN EADYWLLSDA DVSITDMWTE
401: SALDWNAFDS INEDYSIADV STPRAQTPPS STTEVPSANT TGS

Best Arabidopsis Sequence Match ( AT5G22220.2 )
(BLAST)

001: MSEEVPQQFP SSKRQLHPSL SSMKPPLVAP GEYHRFDAAE TRGGGAVADQ VVSDAIVIKS TLKRKTDLVN QIVEVNELNT GVLQTPVSGK GGKAKKTSRS
101: AKSNKSGTLA SGSNAGSPGN NFAQAGTCRY DSSLGLLTKK FINLIKQAED GILDLNKAAD TLEVQKRRIY DITNVLEGIG LIEKTLKNRI QWKGLDVSKP
201: GETIESIANL QDEVQNLAAE EARLDDQIRE SQERLTSLSE DENNKRLLFV TENDIKNLPC FQNKTLIAVK APHGTTLEVP DPDEAGGYQR RYRIILRSTM
301: GPIDVYLVSQ FEESFEDIPQ ADEPSNVPDE PSNVPDVPSN LPSTSGLPEN HDVSMPMKEE STERNMETQE VDDTQRVYSD IESHDFVDGI MKIVPPDLDM
401: GVDYWFRSEV GEVSITDMWP DESGPDWNQM ITFDQDHAGP SDNKILEQPQ TPSSPTPEES TATRSPTGS

Arabidopsis Description

E2FBTranscription factor E2FB [Source:UniProtKB/Swiss-Prot;Acc:Q9FV71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.