CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006615.1-P	Field mustard	nucleus	94.0	98.06
CDX70990	Canola	nucleus	88.82	93.46
CDX98588	Canola	nucleus	78.88	86.0
CDX92373	Canola	nucleus	78.88	86.0
AT5G22220.2	Thale cress	cytosol	75.57	77.83
VIT_06s0080g01110.t01	Wine grape	nucleus	50.72	54.93
KRH25298	Soybean	nucleus	48.65	52.22
Solyc11g068800.1.1	Tomato	mitochondrion, nucleus	48.45	52.12
KRH30372	Soybean	nucleus	49.48	51.96
PGSC0003DMT400015188	Potato	nucleus	47.41	51.69
PGSC0003DMT400050512	Potato	mitochondrion, nucleus	47.2	50.33
GSMUA_Achr5P17430_001	Banana	plastid	21.95	50.0
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	41.41	48.9
Os04t0416100-01	Rice	nucleus	32.09	48.59
OQU78759	Sorghum	plastid	36.23	46.3
GSMUA_Achr10P...	Banana	nucleus, plastid	41.82	45.91
GSMUA_Achr2P20420_001	Banana	nucleus	39.34	45.45
CDX84581	Canola	plastid	43.06	44.83
GSMUA_Achr6P07100_001	Banana	mitochondrion	43.69	44.51
Zm00001d050664_P002	Maize	mitochondrion, plastid	34.78	44.21
HORVU0Hr1G038470.7	Barley	mitochondrion, plastid	41.82	44.1
TraesCS6B01G233700.2	Wheat	mitochondrion, plastid	41.82	44.1
TraesCS6D01G182600.1	Wheat	mitochondrion, plastid	41.61	43.89
TraesCS6A01G195500.2	Wheat	mitochondrion, plastid	41.61	43.89
Os12t0158800-01	Rice	nucleus	40.17	43.5
Os02t0537500-01	Rice	mitochondrion	42.44	43.16
CDX84164	Canola	plastid	42.86	42.95
TraesCS5B01G125100.1	Wheat	cytosol	39.13	42.57
TraesCS5A01G125900.3	Wheat	cytosol	39.13	42.57
TraesCS5D01G133600.1	Wheat	cytosol	38.92	42.34
Zm00001d016737_P002	Maize	mitochondrion, plastid	40.79	42.27
CDY43755	Canola	plastid	42.65	42.13
Zm00001d023465_P002	Maize	cytosol	38.72	41.1
CDX75078	Canola	plastid	43.27	39.14
TraesCS2D01G295300.2	Wheat	mitochondrion	37.06	39.08
TraesCS2B01G313600.2	Wheat	nucleus	36.65	38.73
CDX79651	Canola	plastid	41.61	38.73
Zm00001d003755_P001	Maize	nucleus	29.4	38.69
TraesCS2A01G297400.1	Wheat	nucleus	36.65	38.65
HORVU5Hr1G040190.4	Barley	plastid	38.51	38.51
CDY16998	Canola	nucleus	29.19	38.42
OQU85083	Sorghum	mitochondrion, plastid	37.06	38.0
OQU81541	Sorghum	nucleus	35.2	37.2
CDY17797	Canola	nucleus	28.78	36.87
HORVU2Hr1G073750.2	Barley	plastid	37.06	32.37
Solyc06g074010.2.1	Tomato	nucleus	47.0	26.8

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	GO:A0A078DIL7	EnsemblPlants:CDX88807	ProteinID:CDX88807
ProteinID:CDX88807.1	ncoils:Coil	InterPro:E2F	InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom
GO:GO:0003674	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005667	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00148871001	InterPro:IPR036388	PFAM:PF02319
PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF72	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785
UniParc:UPI0004EEFE98	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

BnaA03g08420D

Coordinates

chrLK031856:-:1021723..1025249

Molecular Weight (calculated)

53559.6 Da

IEP (calculated)

4.591

GRAVY (calculated)

-0.653

Length

483 amino acids

Sequence
(BLAST)

001: MSDSQQEPEQ HPPPKRQHHP SAASMKPPLV APGDYHRFES AESRGGPDQV SEAIVIKSSL TDMVNQIYEP SEFNTGVLQT AVTGKGGKAK KSSRSFKSNK
101: TGVQAAGFNA GSPGNNFAQA GSCRYDSSLG LLTKKFINLI KQAEDGILDL NKAADTLEVQ KRRIYDITNV LEGIGLIEKT LKNRIQWKGL DVSKPGETME
201: NIANLQLFHL LFAKLLGLFI FPLPVVDEIQ NLSAEEAKLD DQIRESQERL TSLSEDENNK RFLFVSEDDI KNLPCFQNKT LIAVKAPHGT TLEVPDPDEA
301: GGYPQRRYRI IMRSTMGPID VYLVSQFEER FEDIPNVDEP SNVPSTSGVP ENQDVAVPME DSKDKNIETQ EVDDTQRVHS DIESHEFVDG IMKIVPPDLD
401: MDVDYWLRSE VGEVSITDMW PNESGPNWTS QMLSFHQGAG PNWNHQMVSY DQGAGPSNTT QEQPQSPSGP KPEQSTATRS TCS

Best Arabidopsis Sequence Match ( AT5G22220.2 )
(BLAST)

001: MSEEVPQQFP SSKRQLHPSL SSMKPPLVAP GEYHRFDAAE TRGGGAVADQ VVSDAIVIKS TLKRKTDLVN QIVEVNELNT GVLQTPVSGK GGKAKKTSRS
101: AKSNKSGTLA SGSNAGSPGN NFAQAGTCRY DSSLGLLTKK FINLIKQAED GILDLNKAAD TLEVQKRRIY DITNVLEGIG LIEKTLKNRI QWKGLDVSKP
201: GETIESIANL QDEVQNLAAE EARLDDQIRE SQERLTSLSE DENNKRLLFV TENDIKNLPC FQNKTLIAVK APHGTTLEVP DPDEAGGYQR RYRIILRSTM
301: GPIDVYLVSQ FEESFEDIPQ ADEPSNVPDE PSNVPDVPSN LPSTSGLPEN HDVSMPMKEE STERNMETQE VDDTQRVYSD IESHDFVDGI MKIVPPDLDM
401: GVDYWFRSEV GEVSITDMWP DESGPDWNQM ITFDQDHAGP SDNKILEQPQ TPSSPTPEES TATRSPTGS

Arabidopsis Description

E2FBTranscription factor E2FB [Source:UniProtKB/Swiss-Prot;Acc:Q9FV71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.