CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92373	Canola	nucleus	98.65	98.65
CDX70990	Canola	nucleus	85.78	82.79
CDX88807	Canola	cytosol	86.0	78.88
AT5G22220.2	Thale cress	cytosol	82.62	78.04
VIT_06s0080g01110.t01	Wine grape	nucleus	54.18	53.81
KRH25298	Soybean	nucleus	53.5	52.67
Solyc11g068800.1.1	Tomato	mitochondrion, nucleus	52.82	52.12
KRH30372	Soybean	nucleus	53.95	51.96
PGSC0003DMT400015188	Potato	nucleus	51.47	51.47
GSMUA_Achr5P17430_001	Banana	plastid	24.15	50.47
PGSC0003DMT400050512	Potato	mitochondrion, nucleus	51.02	49.89
Os04t0416100-01	Rice	nucleus	34.99	48.59
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	44.02	47.68
GSMUA_Achr10P...	Banana	nucleus, plastid	45.82	46.14
OQU78759	Sorghum	plastid	39.05	45.77
GSMUA_Achr2P20420_001	Banana	nucleus	43.12	45.69
CDX84581	Canola	plastid	47.4	45.26
Zm00001d050664_P002	Maize	mitochondrion, plastid	38.37	44.74
GSMUA_Achr6P07100_001	Banana	mitochondrion	47.4	44.3
HORVU0Hr1G038470.7	Barley	mitochondrion, plastid	45.6	44.1
TraesCS6A01G195500.2	Wheat	mitochondrion, plastid	45.37	43.89
TraesCS6D01G182600.1	Wheat	mitochondrion, plastid	45.37	43.89
TraesCS6B01G233700.2	Wheat	mitochondrion, plastid	45.37	43.89
CDX84164	Canola	plastid	47.4	43.57
Os12t0158800-01	Rice	nucleus	43.79	43.5
Os02t0537500-01	Rice	mitochondrion	46.05	42.95
TraesCS5B01G125100.1	Wheat	cytosol	42.44	42.34
CDY43755	Canola	plastid	46.73	42.33
TraesCS5A01G125900.3	Wheat	cytosol	42.21	42.12
Zm00001d016737_P002	Maize	mitochondrion, plastid	44.02	41.85
TraesCS5D01G133600.1	Wheat	cytosol	41.76	41.67
Zm00001d023465_P002	Maize	cytosol	42.21	41.1
CDX75078	Canola	plastid	47.63	39.51
CDY16998	Canola	nucleus	32.73	39.51
Zm00001d003755_P001	Maize	nucleus	32.51	39.24
CDX79651	Canola	plastid	45.82	39.11
TraesCS2D01G295300.2	Wheat	mitochondrion	40.41	39.08
OQU85083	Sorghum	mitochondrion, plastid	41.31	38.85
TraesCS2B01G313600.2	Wheat	nucleus	39.95	38.73
HORVU5Hr1G040190.4	Barley	plastid	42.21	38.72
TraesCS2A01G297400.1	Wheat	nucleus	39.95	38.65
CDY17797	Canola	nucleus	32.28	37.93
OQU81541	Sorghum	nucleus	39.05	37.86
HORVU2Hr1G073750.2	Barley	plastid	40.18	32.19
Solyc06g074010.2.1	Tomato	nucleus	50.79	26.56

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	GO:A0A078EGY7	EnsemblPlants:CDX98588	ProteinID:CDX98588
ProteinID:CDX98588.1	ncoils:Coil	InterPro:E2F	InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom
GO:GO:0003674	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005667	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00106268001	InterPro:IPR036388	PFAM:PF02319
PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF72	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785
UniParc:UPI0004EDAF97	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

BnaC05g37870D

Coordinates

chrLK031905:-:1274185..1277909

Molecular Weight (calculated)

49035.2 Da

IEP (calculated)

4.517

GRAVY (calculated)

-0.727

Length

443 amino acids

Sequence
(BLAST)

001: MSDSHQRPEH NPPSKRQHHP SAASMKPPLV APGEYHRFDA AETHGGGGLD QVSEEIVIKS SLKRKTDLVN QMDEPSELNA GLLQTPVPAK GGKAKKSSRS
101: VKANAGSPGN NLAQAGSCRY DSSLALLTKK FINLIKQAED GILDLNKAAD TLEVQKRRIY DITNVLEGIG LIEKTLKNRI KWKGLDVSNP GETMENIANL
201: QDEIQNLSFE EAKLDDQIRE SQERLTSLSE DENNKRLLFV TEDDIKNLPC FQNSTLIAVK APHGTTLEVP DPDEAGGYPQ RRYRIILRST MGPIDVYLVS
301: QFEETFEDIP NADEPSNVPS TSGLPDNQDV SMPMKEDITI KNMETQAVDD TQRVSSDIES HDFVDGIMKI VPPDLDMDVD YWLRSEVGEV SITDMWPNES
401: EPTWNQMVSF DQGAGPSNTT MEQSQTTSSP KPEQSTAKRS TSS

Best Arabidopsis Sequence Match ( AT5G22220.2 )
(BLAST)

001: MSEEVPQQFP SSKRQLHPSL SSMKPPLVAP GEYHRFDAAE TRGGGAVADQ VVSDAIVIKS TLKRKTDLVN QIVEVNELNT GVLQTPVSGK GGKAKKTSRS
101: AKSNKSGTLA SGSNAGSPGN NFAQAGTCRY DSSLGLLTKK FINLIKQAED GILDLNKAAD TLEVQKRRIY DITNVLEGIG LIEKTLKNRI QWKGLDVSKP
201: GETIESIANL QDEVQNLAAE EARLDDQIRE SQERLTSLSE DENNKRLLFV TENDIKNLPC FQNKTLIAVK APHGTTLEVP DPDEAGGYQR RYRIILRSTM
301: GPIDVYLVSQ FEESFEDIPQ ADEPSNVPDE PSNVPDVPSN LPSTSGLPEN HDVSMPMKEE STERNMETQE VDDTQRVYSD IESHDFVDGI MKIVPPDLDM
401: GVDYWFRSEV GEVSITDMWP DESGPDWNQM ITFDQDHAGP SDNKILEQPQ TPSSPTPEES TATRSPTGS

Arabidopsis Description

E2FBTranscription factor E2FB [Source:UniProtKB/Swiss-Prot;Acc:Q9FV71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.