Factsheet for Os04t0416100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P17430_001	Banana	plastid	33.54	50.47
TraesCS2A01G297400.1	Wheat	nucleus	66.46	46.29
TraesCS2B01G313600.2	Wheat	nucleus	66.14	46.17
TraesCS2D01G295300.2	Wheat	mitochondrion	65.2	45.41
Os02t0537500-01	Rice	mitochondrion	64.58	43.37
Zm00001d003755_P001	Maize	nucleus	49.53	43.05
OQU81541	Sorghum	nucleus	61.13	42.67
VIT_06s0080g01110.t01	Wine grape	nucleus	55.49	39.69
KRH30372	Soybean	nucleus	56.74	39.35
KRH25298	Soybean	nucleus	55.49	39.33
GSMUA_Achr6P07100_001	Banana	mitochondrion	58.31	39.24
VIT_08s0007g02510.t01	Wine grape	plastid	56.43	38.63
Os12t0158800-01	Rice	nucleus	53.6	38.34
PGSC0003DMT400042347	Potato	plastid	56.11	37.45
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	47.96	37.41
Solyc01g007760.2.1	Tomato	plastid	56.11	37.37
Solyc11g068800.1.1	Tomato	mitochondrion, nucleus	50.78	36.08
HORVU2Hr1G073750.2	Barley	plastid	62.38	35.99
PGSC0003DMT400050512	Potato	mitochondrion, nucleus	50.78	35.76
KRH72218	Soybean	nucleus	52.35	35.68
KRH32815	Soybean	nucleus	52.04	35.62
PGSC0003DMT400015188	Potato	nucleus	49.22	35.44
Bra023047.1-P	Field mustard	plastid	51.72	35.18
CDX84581	Canola	plastid	51.1	35.13
Bra017268.1-P	Field mustard	plastid	53.6	35.11
CDX98588	Canola	nucleus	48.59	34.99
CDX92373	Canola	nucleus	48.28	34.76
Bra002398.1-P	Field mustard	nucleus	47.96	34.54
CDY43755	Canola	plastid	52.66	34.36
CDX70990	Canola	nucleus	48.9	33.99
AT5G22220.2	Thale cress	cytosol	49.53	33.69
Bra006615.1-P	Field mustard	nucleus	48.59	33.48
Bra005305.1-P	Field mustard	plastid	50.47	33.47
CDX84164	Canola	plastid	50.47	33.4
CDX88807	Canola	cytosol	48.59	32.09
CDX79651	Canola	plastid	50.16	30.83
CDX75078	Canola	plastid	50.78	30.34
AT2G36010.2	Thale cress	plastid	47.02	29.18
PGSC0003DMT400013986	Potato	cytosol	8.15	26.53
KRH26172	Soybean	nucleus	14.73	25.0
Os04t0112200-00	Rice	nucleus, plastid	35.74	23.75
Solyc06g074010.2.1	Tomato	nucleus	48.9	18.42

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	EMBL:AK067581	ProteinID:BAF14677.1	ProteinID:BAS89157.1
ncoils:Coil	InterPro:E2F	InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983
InterPro:IPR036388	EnsemblPlantsGene:Os04g0416100	EnsemblPlants:Os04t0416100-01	PFAM:PF02319	PFAM:PF16421	PANTHER:PTHR12081
PANTHER:PTHR12081:SF72	UniProt:Q0JDB0	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785	UniParc:UPI0000DD908B
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

E2F transcription factor 3Similar to Transcription factor E2F1 (E2F-1) (Fragment). (Os04t0416100-01)

Coordinates

chr4:-:20549988..20555142

Molecular Weight (calculated)

35240.0 Da

IEP (calculated)

9.064

GRAVY (calculated)

-0.569

Length

319 amino acids

Sequence
(BLAST)

001: MSSGGGRPPA AQHIVRSVRQ RFVPLPPPLA RAPFAAAPGD YHRFAAASRG GEIEEGIVIR RTPLKRKTPC GESEAAESSE RMMTSPGFTE GVGSPLMTPV
101: SGKTSRTTKS MAKFNKAGPQ TPISNAGSPG NPSTPASSRY DNSLGLLTRK FINLLKQTQD GILDLNDAAK ILDVRKRRIY DITNVLEGTG LIEKKLKNRI
201: RWRGSDDSGT NLDSDISCLK TEVENLYIQE QALDRSISEI REKMEELTED ESNHRWLFVT EDDIKGLPCF QNEALIAIKG PRGTTVEVPD PDEAGDYLQR
301: RYRILLRSTM GPIDIYLVR

Best Arabidopsis Sequence Match ( AT2G36010.1 )
(BLAST)

001: MSGVVRSSPG SSQPPPPPPH HPPSSPVPVT STPVIPPIRR HLAFASTKPP FHPSDDYHRF NPSSLSNNND RSFVHGCGVV DREEDAVVVR SPSRKRKATM
101: DMVVAPSNNG FTSSGFTNIP SSPCQTPRKG GRVNIKSKAK GNKSTPQTPI STNAGSPITL TPSGSCRYDS SLGLLTKKFV NLIKQAKDGM LDLNKAAETL
201: EVQKRRIYDI TNVLEGIDLI EKPFKNRILW KGVDACPGDE DADVSVLQAE IENLALEEQA LDNQIRQTEE RLRDLSENEK NQKWLFVTEE DIKSLPGFQN
301: QTLIAVKAPH GTTLEVPDPD EAADHPQRRY RIILRSTMGP IDVYLVSEFE GKFEDTNGSG AAPPACLPIA SSSGSTGHHD IEALTVDNPE TAIVSHDHPH
401: PQPGDTSDLN YLQEQVGGML KITPSDVEND ESDYWLLSNA EISMTDIWKT DSGIDWDYGI ADVSTPPPGM GEIAPTAVDS TPR

Arabidopsis Description

E2F3E2F transcription factor 3 [Source:UniProtKB/TrEMBL;Acc:F4ILT1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.