CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005305.1-P	Field mustard	plastid	89.33	99.17
CDX84164	Canola	plastid	85.96	95.23
CDX84581	Canola	plastid	71.35	82.11
CDY43755	Canola	plastid	72.28	78.94
CDX79651	Canola	plastid	69.66	71.68
AT2G36010.2	Thale cress	plastid	62.36	64.79
VIT_08s0007g02510.t01	Wine grape	plastid	50.94	58.37
KRH32815	Soybean	nucleus	48.31	55.36
KRH72218	Soybean	nucleus	48.5	55.34
GSMUA_Achr5P17430_001	Banana	plastid	21.35	53.77
Solyc01g007760.2.1	Tomato	plastid	47.75	53.24
PGSC0003DMT400042347	Potato	plastid	47.57	53.14
OQU78759	Sorghum	plastid	37.08	52.38
Os04t0416100-01	Rice	nucleus	30.34	50.78
GSMUA_Achr2P20420_001	Banana	nucleus	38.76	49.52
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	37.45	48.9
TraesCS5B01G125100.1	Wheat	cytosol	40.26	48.42
TraesCS5D01G133600.1	Wheat	cytosol	40.07	48.2
TraesCS5A01G125900.3	Wheat	cytosol	40.07	48.2
Os12t0158800-01	Rice	nucleus	40.07	47.98
CDX98588	Canola	nucleus	39.51	47.63
TraesCS6B01G233700.2	Wheat	mitochondrion, plastid	40.82	47.6
Os02t0537500-01	Rice	mitochondrion	42.32	47.58
CDX92373	Canola	nucleus	39.33	47.4
TraesCS6D01G182600.1	Wheat	mitochondrion, plastid	40.64	47.38
TraesCS6A01G195500.2	Wheat	mitochondrion, plastid	40.64	47.38
GSMUA_Achr6P07100_001	Banana	mitochondrion	41.95	47.26
GSMUA_Achr10P...	Banana	nucleus, plastid	38.76	47.05
HORVU0Hr1G038470.7	Barley	mitochondrion, plastid	40.26	46.94
Zm00001d050664_P002	Maize	mitochondrion, plastid	33.33	46.84
Zm00001d023465_P002	Maize	cytosol	39.33	46.15
CDX70990	Canola	nucleus	38.95	45.32
Zm00001d016737_P002	Maize	mitochondrion, plastid	39.51	45.28
HORVU5Hr1G040190.4	Barley	plastid	40.07	44.31
TraesCS2B01G313600.2	Wheat	nucleus	37.08	43.33
CDX88807	Canola	cytosol	39.14	43.27
TraesCS2A01G297400.1	Wheat	nucleus	37.08	43.23
TraesCS2D01G295300.2	Wheat	mitochondrion	36.14	42.14
OQU85083	Sorghum	mitochondrion, plastid	36.7	41.61
Zm00001d003755_P001	Maize	nucleus	28.28	41.14
OQU81541	Sorghum	nucleus	34.83	40.7
CDY16998	Canola	nucleus	26.97	39.24
CDY17797	Canola	nucleus	26.22	37.14
HORVU2Hr1G073750.2	Barley	plastid	35.39	34.18

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	GO:A0A078CJ48	EnsemblPlants:CDX75078	ProteinID:CDX75078
ProteinID:CDX75078.1	ncoils:Coil	InterPro:E2F	InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom
GO:GO:0003674	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005667	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00117117001	InterPro:IPR036388	PFAM:PF02319
PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF72	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785
UniParc:UPI0004EE076C	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

BnaA05g08240D

Coordinates

chrLK031802:-:2388755..2391889

Molecular Weight (calculated)

58035.1 Da

IEP (calculated)

4.762

GRAVY (calculated)

-0.415

Length

534 amino acids

Sequence
(BLAST)

001: MSGGVRSSPG PSRQPPPPPS SSAASVPVVP PISRHLAFAS TKPPFHPSDN YHRFTPSHLT NNLVNGCGGL VDREEDAVVL RSPVSSPRST IYSNCYGLLS
101: SNCAVLISPT VKLCVSQSVS IKVMLHEAWS ILFIYHSRKR KSTMDVVTTT TSSTSNGFTS SDGFTSSPCR TPVSAKGGRV NIKSKSKGNQ SIPQTPISNI
201: GSPVTLTPSG SCRYDSSLGL LTKKFVNLIK QAKDGMLDLN KAAETLEVQK RRIYDITNVL EGIDLIEKPL KNRILWKGVD ASGPGDVDAD VSDVQAEIEN
301: LSLEEQALDN QIRETEQRLR DLSENEKNQK WLFVTEEDIK SLPGFQNQTL IAVKAPHGTT LEVPDPDEGV GHPQRRYRII LRSTMGPIDV YLVSEFEEKF
401: EDTNGPAEPP PPLCLPIASC SGSTENHDIE ALTADNTGTA IEDQLSQVHA HAQPGETSDL NYLEEQVGGM LKITPSDVEN DDTDYWLLSN ADISMTDIWK
501: TDSGIDWDYG IADVSTPPPM IGDISPTAID SIPR

Best Arabidopsis Sequence Match ( AT2G36010.1 )
(BLAST)

001: MSGVVRSSPG SSQPPPPPPH HPPSSPVPVT STPVIPPIRR HLAFASTKPP FHPSDDYHRF NPSSLSNNND RSFVHGCGVV DREEDAVVVR SPSRKRKATM
101: DMVVAPSNNG FTSSGFTNIP SSPCQTPRKG GRVNIKSKAK GNKSTPQTPI STNAGSPITL TPSGSCRYDS SLGLLTKKFV NLIKQAKDGM LDLNKAAETL
201: EVQKRRIYDI TNVLEGIDLI EKPFKNRILW KGVDACPGDE DADVSVLQAE IENLALEEQA LDNQIRQTEE RLRDLSENEK NQKWLFVTEE DIKSLPGFQN
301: QTLIAVKAPH GTTLEVPDPD EAADHPQRRY RIILRSTMGP IDVYLVSEFE GKFEDTNGSG AAPPACLPIA SSSGSTGHHD IEALTVDNPE TAIVSHDHPH
401: PQPGDTSDLN YLQEQVGGML KITPSDVEND ESDYWLLSNA EISMTDIWKT DSGIDWDYGI ADVSTPPPGM GEIAPTAVDS TPR

Arabidopsis Description

E2F3E2F transcription factor 3 [Source:UniProtKB/TrEMBL;Acc:F4ILT1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.