Factsheet for Bra005305.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75078	Canola	plastid	99.17	89.33
Bra023047.1-P	Field mustard	plastid	79.21	81.24
Bra017268.1-P	Field mustard	plastid	80.46	79.47
AT2G36010.2	Thale cress	plastid	67.57	63.23
VIT_08s0007g02510.t01	Wine grape	plastid	56.34	58.15
KRH32815	Soybean	nucleus	53.22	54.94
KRH72218	Soybean	nucleus	53.43	54.91
GSMUA_Achr5P17430_001	Banana	plastid	23.7	53.77
Solyc01g007760.2.1	Tomato	plastid	53.01	53.24
PGSC0003DMT400042347	Potato	plastid	52.81	53.14
OQU78759	Sorghum	plastid	40.96	52.12
Os04t0416100-01	Rice	nucleus	33.47	50.47
GSMUA_Achr2P20420_001	Banana	nucleus	43.04	49.52
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	41.58	48.9
TraesCS5B01G125100.1	Wheat	cytosol	44.28	47.97
TraesCS5A01G125900.3	Wheat	cytosol	44.07	47.75
TraesCS5D01G133600.1	Wheat	cytosol	44.07	47.75
TraesCS6B01G233700.2	Wheat	mitochondrion, plastid	45.32	47.6
Os02t0537500-01	Rice	mitochondrion	46.99	47.58
Os12t0158800-01	Rice	nucleus	44.07	47.53
TraesCS6D01G182600.1	Wheat	mitochondrion, plastid	45.11	47.38
TraesCS6A01G195500.2	Wheat	mitochondrion, plastid	45.11	47.38
Bra002398.1-P	Field mustard	nucleus	43.45	47.18
GSMUA_Achr6P07100_001	Banana	mitochondrion	46.36	47.05
HORVU0Hr1G038470.7	Barley	mitochondrion, plastid	44.7	46.94
GSMUA_Achr10P...	Banana	nucleus, plastid	42.83	46.82
Zm00001d050664_P002	Maize	mitochondrion, plastid	36.8	46.58
Zm00001d023465_P002	Maize	cytosol	43.24	45.71
Bra006615.1-P	Field mustard	nucleus	43.45	45.14
Zm00001d016737_P002	Maize	mitochondrion, plastid	43.66	45.06
HORVU5Hr1G040190.4	Barley	plastid	44.07	43.89
TraesCS2B01G313600.2	Wheat	nucleus	40.96	43.11
TraesCS2A01G297400.1	Wheat	nucleus	40.96	43.01
TraesCS2D01G295300.2	Wheat	mitochondrion	39.92	41.92
OQU85083	Sorghum	mitochondrion, plastid	40.54	41.4
Zm00001d003755_P001	Maize	nucleus	31.39	41.14
OQU81541	Sorghum	nucleus	38.46	40.48
Bra014096.1-P	Field mustard	nucleus	29.73	38.96
HORVU2Hr1G073750.2	Barley	plastid	38.67	33.63

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	EnsemblPlantsGene:Bra005305	EnsemblPlants:Bra005305.1	EnsemblPlants:Bra005305.1-P
ncoils:Coil	InterPro:E2F	InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983
InterPro:IPR036388	UniProt:M4CM68	PFAM:PF02319	PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF72
SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785	UniParc:UPI0002547D3E	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

AT2G36010 (E=6e-192) E2F3, ATE2FA | E2F3 (E2F TRANSCRIPTION FACTOR 3); DNA binding / transcription factor

Coordinates

chrA05:-:4683596..4686512

Molecular Weight (calculated)

52214.9 Da

IEP (calculated)

4.580

GRAVY (calculated)

-0.526

Length

481 amino acids

Sequence
(BLAST)

001: MSGGVRSSPG PSHQPPPPPS SSAASVPVVP PISRHLAFAS TKPPFHPSDN YHRFTPSHLT NNLVNGCGGL VDREEDAVVL RSPSRKRKTT MDVVTTTTSS
101: TSNGFTSSDG FTSSPCRTPV SAKGGRVNIK SKSKVNQSIP QTPISNIGSP ATLTPSGSCR YDSSLGLLTK KFVNLIKQAK DGMLDLNKAA ETLEVQKRRI
201: YDITNVLEGI DLIEKPLKNR ILWKGVDASG PGDVDADVSD VQAEIENLSL EEQALDNQIR ETEQRLRDLS ENEKNQKWLF VTEEDIKSLP GFQNQTLIAV
301: KAPHGTTLEV PDPDEGVGHP QRRYRIILRS TMGPIDVYLV SEFEEKFEDT NGPAEPPPPL CLPIASCSGS TENHDIEALT ADNTGTAIED QLSQVHAHAQ
401: PGETSDLNYL EEQVGGMLKI TPSDVENDDT DYWLLSNADI SMTDIWKTDS GIDWDYGIAD VSTPPPMIGD ISPTAIDSIP R

Best Arabidopsis Sequence Match ( AT2G36010.1 )
(BLAST)

001: MSGVVRSSPG SSQPPPPPPH HPPSSPVPVT STPVIPPIRR HLAFASTKPP FHPSDDYHRF NPSSLSNNND RSFVHGCGVV DREEDAVVVR SPSRKRKATM
101: DMVVAPSNNG FTSSGFTNIP SSPCQTPRKG GRVNIKSKAK GNKSTPQTPI STNAGSPITL TPSGSCRYDS SLGLLTKKFV NLIKQAKDGM LDLNKAAETL
201: EVQKRRIYDI TNVLEGIDLI EKPFKNRILW KGVDACPGDE DADVSVLQAE IENLALEEQA LDNQIRQTEE RLRDLSENEK NQKWLFVTEE DIKSLPGFQN
301: QTLIAVKAPH GTTLEVPDPD EAADHPQRRY RIILRSTMGP IDVYLVSEFE GKFEDTNGSG AAPPACLPIA SSSGSTGHHD IEALTVDNPE TAIVSHDHPH
401: PQPGDTSDLN YLQEQVGGML KITPSDVEND ESDYWLLSNA EISMTDIWKT DSGIDWDYGI ADVSTPPPGM GEIAPTAVDS TPR

Arabidopsis Description

E2F3E2F transcription factor 3 [Source:UniProtKB/TrEMBL;Acc:F4ILT1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.