Factsheet for Bra014096.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001446.1-P
Bra005763.1-P	cytosol, nucleus
Bra009841.1-P
Bra017840.1-P
Bra020500.1-P
Bra021272.1-P
Bra022241.1-P
Bra034764.1-P
Bra038707.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G47870.1	Bra001446.1-P	AT3G12280.1	22921914
AT1G47870.1	Bra034764.1-P	AT3G12280.1	22921914
AT1G47870.1	Bra038707.1-P	AT3G12280.1	22921914
AT1G47870.1	Bra021272.1-P	AT3G17760.1	20706207
AT1G47870.1	Bra022241.1-P	AT3G17760.1	20706207
AT1G47870.1	Bra017840.1-P	AT4G37630.1	20407024
AT1G47870.1	Bra005763.1-P	AT5G03415.1	11891240
AT1G47870.1	Bra005763.1-P	AT5G03415.1	20407024
AT1G47870.1	Bra005763.1-P	AT5G03415.1	20407024
AT1G47870.1	Bra009841.1-P	AT5G25460.1	20706207
AT1G47870.1	Bra020500.1-P	AT5G25460.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16998	Canola	nucleus	100.0	100.0
AT1G47870.1	Thale cress	nucleus, plastid	70.84	65.66
KRH61047	Soybean	cytosol, nucleus, plastid	40.33	41.69
KRH51709	Soybean	nucleus	43.32	37.32
VIT_18s0001g14110.t01	Wine grape	nucleus	44.69	36.53
Solyc04g081350.2.1	Tomato	plastid	37.6	34.76
PGSC0003DMT400009682	Potato	plastid	37.6	34.5
GSMUA_Achr4P17950_001	Banana	nucleus	37.33	33.91
Bra002398.1-P	Field mustard	nucleus	38.96	32.28
Bra023047.1-P	Field mustard	plastid	40.87	31.98
KRH07603	Soybean	cytosol	16.08	31.22
Bra006615.1-P	Field mustard	nucleus	38.15	30.24
Bra017268.1-P	Field mustard	plastid	39.51	29.77
Bra005305.1-P	Field mustard	plastid	38.96	29.73
Os04t0112200-00	Rice	nucleus, plastid	38.15	29.17
Zm00001d004512_P001	Maize	plastid	36.78	28.85
TraesCS2A01G031800.1	Wheat	plastid	35.42	28.76
TraesCS2D01G031400.1	Wheat	plastid	35.97	28.76
TraesCS2B01G043500.1	Wheat	plastid	35.42	28.14
EES11756	Sorghum	plastid	36.78	27.55
HORVU2Hr1G004820.2	Barley	cytosol	9.26	27.2

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	EnsemblPlantsGene:Bra014096	EnsemblPlants:Bra014096.1	EnsemblPlants:Bra014096.1-P
ncoils:Coil	InterPro:E2F	InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0000902
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0005730
GO:GO:0006139	GO:GO:0006259	GO:GO:0006351	GO:GO:0006355	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009987	GO:GO:0016043	GO:GO:0019748
GO:GO:0019760	GO:GO:0042023	GO:GO:0043565	GO:GO:0044212	GO:GO:0046982	GO:GO:0046983
GO:GO:0051301	GO:GO:0051782	InterPro:IPR036388	UniProt:M4DC83	PFAM:PF02319	PFAM:PF16421
PANTHER:PTHR12081	PANTHER:PTHR12081:SF51	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785	UniParc:UPI0002546913
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

AT1G47870 (E=6e-122) E2FC, ATE2F2, ATE2FC | ATE2F2; DNA binding / protein heterodimerization/ transcription factor

Coordinates

chrA08:-:3553057..3555286

Molecular Weight (calculated)

41548.0 Da

IEP (calculated)

5.706

GRAVY (calculated)

-0.680

Length

367 amino acids

Sequence
(BLAST)

001: MAATSKSGED PSLSYKHRSP FRFELIHSPS PTDPLHSSST NRPLSVPQPQ IQAHWDESFS PIPITQKLQK SRKNHSISSS SMPGETIDIA KVIVKQESPQ
101: DNTKRGTKSK VTKLSKSVKR EGLQLSGPNG SNNCRYDSSL GLLTKKFVNL IREAEDGSLD LNYCADVLEV QKRRIYDITN VLEGVGLIEK TTKNHIRWKG
201: ADNLGQLELG NQISRLKLEV ESMQSEENRL DDLIRERQEA LRSLEEDEHC KRYMFMTEED ITSLPCFQNQ TLLAIKAPTA SCIEVPDPDE VMSFPQRQYR
301: MVIRSRMGPI DVYLLSKHKG DSSMETDESA VDTSSLKIVT SDTDLKTDYW FESGEEVTLT DLWNNFC

Best Arabidopsis Sequence Match ( AT1G47870.1 )
(BLAST)

001: MAATSNSGED PTLSYHHRSP FRFELLQSIS SSDPRYSSLT PSSTNRPFSV SQSLPNSQLS PLISPHWDDS YSQITQKVQK SRKNHRIQLG SIANMSGGES
101: IDIAKVIVKQ ESSPQNVKRV YNKSKGGTKL LKAGKRMANG EVQNGGLNGA SINCRYDSSL GLLTKKFVKL IQEAEDGTLD LNYCAVVLEV QKRRIYDITN
201: VLEGIGLIEK TTKNHIRWKG ADNLGQKDLG DQISRLKSEV ESMQSEESRL DDLIRERQEA LRSLEEDDYC RRYMFMTEED ITSLPRFQNQ TLLAIKAPTA
301: SYIEVPDPDE MSFPQQYRMV IRSRMGPIDV YLLSKYKGDS AETSDKLGNE SDQKAPVGVD TPSLKIVTSD TDLKADYWFE SDAEVSLTDL WSNFNS

Arabidopsis Description

E2FCE2FC [Source:UniProtKB/TrEMBL;Acc:A0A178WB46]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.