Factsheet for Bra005763.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001110.1-P
Bra001446.1-P
Bra007982.1-P
Bra007983.1-P
Bra008973.1-P	cytosol, nucleus
Bra012553.1-P
Bra013385.1-P
Bra013838.1-P
Bra014096.1-P
Bra015169.1-P
Bra016143.1-P
Bra018420.1-P
Bra019898.1-P
Bra020966.1-P
Bra031745.1-P
Bra034764.1-P
Bra038707.1-P
Bra040393.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03415.1	Bra018420.1-P	AT1G10840.1	20706207
AT5G03415.1	Bra019898.1-P	AT1G10840.1	20706207
AT5G03415.1	Bra031745.1-P	AT1G10840.1	20706207
AT5G03415.1	Bra014096.1-P	AT1G47870.1	11891240
AT5G03415.1	Bra007982.1-P	AT1G71380.1	20706207
AT5G03415.1	Bra007983.1-P	AT1G71380.1	20706207
AT5G03415.1	Bra016143.1-P	AT1G71380.1	20706207
AT5G03415.1	Bra015169.1-P	AT2G05830.1	20706207
AT5G03415.1	Bra001110.1-P	AT3G04620.1	20706207
AT5G03415.1	Bra040393.1-P	AT3G04620.1	20706207
AT5G03415.1	Bra001446.1-P	AT3G12280.1	20706207
AT5G03415.1	Bra034764.1-P	AT3G12280.1	20706207
AT5G03415.1	Bra038707.1-P	AT3G12280.1	20706207
AT5G03415.1	Bra012553.1-P	AT4G19210.1	20706207
AT5G03415.1	Bra013385.1-P	AT4G19210.1	20706207
AT5G03415.1	Bra020966.1-P	AT4G19210.1	20706207
AT5G03415.1	Bra013838.1-P	AT4G24820.1	20706207
AT5G03415.1	Bra008973.1-P	AT5G11300.1	20407024
AT5G03415.1	Bra008973.1-P	AT5G11300.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11252	Canola	nucleus	90.96	91.97
KRH27723	Soybean	nucleus	56.71	61.42
KRH77687	Soybean	nucleus	56.16	60.65
AT5G03415.1	Thale cress	nucleus	63.01	59.74
Solyc10g078430.1.1	Tomato	nucleus	55.07	56.78
PGSC0003DMT400021592	Potato	nucleus	55.07	56.46
VIT_08s0040g01300.t01	Wine grape	nucleus	15.89	50.43
GSMUA_Achr5P12500_001	Banana	mitochondrion, nucleus	20.27	48.05
VIT_08s0040g01330.t01	Wine grape	nucleus	42.19	43.26
Bra005726.1-P	Field mustard	nucleus	29.04	37.46
Bra009586.1-P	Field mustard	nucleus	29.59	37.24

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.140.80	MapMan:13.1.2.3	MapMan:15.5.10	EnsemblPlantsGene:Bra005763	EnsemblPlants:Bra005763.1
EnsemblPlants:Bra005763.1-P	ncoils:Coil	InterPro:E2F-DP_heterodim	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259
GO:GO:0006351	GO:GO:0006355	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0042023	GO:GO:0046982	InterPro:IPR036388	InterPro:IPR038168	UniProt:M4CNH5
PFAM:PF02319	PFAM:PF08781	PIRSF:PIRSF009404	PANTHER:PTHR12548	PANTHER:PTHR12548:SF15	SMART:SM01138
SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785	InterPro:TF_DP_C_sf	InterPro:Transc_factor_DP_C	InterPro:Transcrpt_fac_DP
UniParc:UPI000253FB26	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

AT5G03415 (E=2e-129) DPB, ATDPB | DPB; protein binding / protein heterodimerization

Coordinates

chrA03:+:476707..478631

Molecular Weight (calculated)

40355.8 Da

IEP (calculated)

6.095

GRAVY (calculated)

-0.801

Length

365 amino acids

Sequence
(BLAST)

001: MTTPPSNSIH NHHEDSPVKN PPSTTVSAQS VSSSGSVGSP LSRAEQPTTV ATTPASDDPA SQLASGSGQK KKRRGQRASG PDKNGRGLRQ FSLKVCEKVE
101: SKGRTTYNEV ADELVAEFAL PNNDDTSPDQ QQYDEKNIRR RVYDALNVLM AMDIVSKYQK EILWRGLPRS SLSDIEELKA ERLSLRSRIE KKTEYSQELE
201: EQYVGLQNLI RRNEHLYSSG NAPNGGVTLP FILVQTRPNA TVEVEISEDM QLVHFDFNTT PFELHDDNFV LKTMKFCDQP PLNNGHNNNS HETSHSFVPE
301: ENKEGLSTDP KLPQQVDTDQ SHHQLHAQPQ IIPTPVTINA SAASNAPVTS PPLSGIIKSS VKTEN

Best Arabidopsis Sequence Match ( AT5G03415.1 )
(BLAST)

001: MTTTGSNSNH NHHESNNNNN NPSTRSWGTA VSGQSVSTSG SMGSPSSRSE QTITVVTSTS DTTFQRLNNL DIQGDDAGSQ GASGVKKKKR GQRAAGPDKT
101: GRGLRQFSMK VCEKVESKGR TTYNEVADEL VAEFALPNND GTSPDQQQYD EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW RGLPRTSLSD IEELKNERLS
201: LRNRIEKKTA YSQELEEQYV GLQNLIQRNE HLYSSGNAPS GGVALPFILV QTRPHATVEV EISEDMQLVH FDFNSTPFEL HDDNFVLKTM KFCDQPPQQP
301: NGRNNSQLVC HNFTPENPNK GPSTGPTPQL DMYETHLQSQ QHQQHSQLQI IPMPETNNVT SSADTAPVKS PSLPGIMNSS MKPEN

Arabidopsis Description

DPBTranscription factor-like protein DPB [Source:UniProtKB/Swiss-Prot;Acc:Q9FNY2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.