Factsheet for Bra019898.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018828.1-P
Bra039647.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10840.1	Bra018828.1-P	AT1G50030.1	23524850
AT1G10840.1	Bra039647.1-P	AT1G50030.1	23524850

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97915	Canola	cytosol	99.41	99.41
Bra031745.1-P	Field mustard	cytosol	98.81	98.81
CDY19324	Canola	cytosol	98.81	98.81
AT1G10840.1	Thale cress	cytosol	98.22	98.22
Bra018420.1-P	Field mustard	cytosol	97.92	97.92
VIT_05s0062g01080.t01	Wine grape	cytosol	83.68	83.68
PGSC0003DMT400011661	Potato	cytosol	83.09	82.84
PGSC0003DMT400055712	Potato	cytosol	83.09	82.84
Solyc09g098280.2.1	Tomato	nucleus	83.09	82.84
KRH01550	Soybean	cytosol	82.79	82.79
Solyc12g098680.1.1	Tomato	cytosol	82.49	82.25
KRH70557	Soybean	endoplasmic reticulum	82.49	82.01
GSMUA_Achr6P27570_001	Banana	cytosol	80.71	80.71
TraesCS2A01G279200.1	Wheat	cytosol	72.11	78.9
GSMUA_Achr9P07190_001	Banana	cytosol	76.85	76.85
Os04t0376500-01	Rice	nucleus	78.64	76.37
Zm00001d025185_P001	Maize	extracellular, mitochondrion	76.85	75.51
TraesCS2B01G296700.1	Wheat	golgi, unclear	76.56	75.22
TraesCS2D01G278200.1	Wheat	cytosol	76.56	75.22
HORVU2Hr1G068360.8	Barley	cytosol, plastid	76.85	70.57
Zm00001d025193_P003	Maize	cytosol, mitochondrion, plastid	76.85	69.44
OQU81340	Sorghum	cytosol	72.4	67.4

Protein Annotations

MapMan:17.4.1.3.8	Gene3D:3.40.140.10	EnsemblPlantsGene:Bra019898	EnsemblPlants:Bra019898.1	EnsemblPlants:Bra019898.1-P	GO:GO:0001731
GO:GO:0001732	GO:GO:0002183	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0033290
InterPro:IPR037518	InterPro:JAMM/MPN+_dom	UniProt:M4DTQ5	HAMAP:MF_03007	InterPro:MPN	PFAM:PF01398
PFscan:PS50249	PANTHER:PTHR10410	PANTHER:PTHR10410:SF3	SMART:SM00232	UniParc:UPI000253EA9C	InterPro:eIF3h
SEG:seg	:	:	:	:	:

Description

AT1G10840 (E=5e-188) TIF3H1 | TIF3H1; translation initiation factor

Coordinates

chrA06:-:3815371..3817454

Molecular Weight (calculated)

38354.7 Da

IEP (calculated)

4.552

GRAVY (calculated)

-0.346

Length

337 amino acids

Sequence
(BLAST)

001: MATMARSFLQ AISKDEAVAP PLRVVQIEGL AVLKIIKHCK EFGPTLATGQ LLGLDVGSVL EVTNCFPFPV RDDDEEIEAD GANYQLEMMR CLREVNVDNN
101: TVGWYQSTVL GSYQTVELIE TFMNYQENIK RCVCIIYDPS KADLGVLALK ALKLSDSFME LYRGGNFTGE KLREKNFSWM DIFEEIPIKV SNSALVSAFM
201: TELETDAPVS QGDYDRLHSS TTPFLENNME FLIKCMDDLS MEQQKFQYYY RNLSRQQAQQ QAWLQKRRTE NMARRSAGEE PLPEEDPSNP IFKPIPEPSR
301: LESFLITNQV SNFCGQINGV AGQNFSRLYL TKALHEN

Best Arabidopsis Sequence Match ( AT1G10840.1 )
(BLAST)

001: MATMARSFLQ AISKDEAVAP PLRVVQIEGL AVLKIIKHCK EFSPTLVTGQ LLGLDVGSVL EVTNCFPFPV RDDDEEIEAD GANYQLEMMR CLREVNVDNN
101: TVGWYQSTVL GSYQTVELIE TFMNYQENIK RCVCIIYDPS KADLGVLALK ALKLSDSFME LYRGGNFTGE KLREKNFSWM DIFEEIPIKV SNSALVSAFM
201: TELETDTPVS QGDYDRLHSS TTPFLENNME FLIKCMDDLS MEQQKFQYYY RNLSRQQAQQ QAWLQKRRTE NMARKSAGEE PLPEEDPSNP IFKAIPEPSR
301: LESFLITNQV SNFCGQINGV AGQNFSRLYL TKALHDN

Arabidopsis Description

TIF3H1Eukaryotic translation initiation factor 3 subunit H [Source:UniProtKB/Swiss-Prot;Acc:Q9C5Z2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.