Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97915 | Canola | cytosol | 98.52 | 98.52 |
| CDY20600 | Canola | cytosol | 93.18 | 98.43 |
| CDY20601 | Canola | cytosol | 93.18 | 98.43 |
| Bra019898.1-P | Field mustard | cytosol | 98.22 | 98.22 |
| CDY20970 | Canola | cytosol | 98.22 | 98.22 |
| Bra018420.1-P | Field mustard | cytosol | 98.22 | 98.22 |
| Bra031745.1-P | Field mustard | cytosol | 97.92 | 97.92 |
| CDY19324 | Canola | cytosol | 97.92 | 97.92 |
| CDY34854 | Canola | cytosol | 97.63 | 97.63 |
| CDY34673 | Canola | cytosol | 97.33 | 97.33 |
| VIT_05s0062g01080.t01 | Wine grape | cytosol | 84.27 | 84.27 |
| Solyc09g098280.2.1 | Tomato | nucleus | 83.68 | 83.43 |
| PGSC0003DMT400055712 | Potato | cytosol | 83.68 | 83.43 |
| PGSC0003DMT400011661 | Potato | cytosol | 83.68 | 83.43 |
| KRH01550 | Soybean | cytosol | 83.38 | 83.38 |
| Solyc12g098680.1.1 | Tomato | cytosol | 83.09 | 82.84 |
| KRH70557 | Soybean | endoplasmic reticulum | 83.09 | 82.6 |
| GSMUA_Achr6P27570_001 | Banana | cytosol | 81.01 | 81.01 |
| TraesCS2A01G279200.1 | Wheat | cytosol | 72.11 | 78.9 |
| GSMUA_Achr9P07190_001 | Banana | cytosol | 77.45 | 77.45 |
| Os04t0376500-01 | Rice | nucleus | 78.64 | 76.37 |
| Zm00001d025185_P001 | Maize | extracellular, mitochondrion | 76.85 | 75.51 |
| TraesCS2B01G296700.1 | Wheat | golgi, unclear | 76.56 | 75.22 |
| TraesCS2D01G278200.1 | Wheat | cytosol | 76.56 | 75.22 |
| HORVU2Hr1G068360.8 | Barley | cytosol, plastid | 76.85 | 70.57 |
| Zm00001d025193_P003 | Maize | cytosol, mitochondrion, plastid | 76.85 | 69.44 |
| OQU81340 | Sorghum | cytosol | 72.4 | 67.4 |
Protein Annotations
| MapMan:17.4.1.3.8 | Gene3D:3.40.140.10 | EntrezGene:837627 | UniProt:A0A178WN13 | ProteinID:AAD31329.1 | ProteinID:AEE28653.1 |
| ProteinID:AEE28654.1 | EMBL:AF285833 | ArrayExpress:AT1G10840 | EnsemblPlantsGene:AT1G10840 | RefSeq:AT1G10840 | TAIR:AT1G10840 |
| RefSeq:AT1G10840-TAIR-G | EnsemblPlants:AT1G10840.1 | TAIR:AT1G10840.1 | EMBL:AY054641 | EMBL:AY081546 | EMBL:AY087338 |
| Unigene:At.17013 | EMBL:BT000765 | GO:GO:0001731 | GO:GO:0001732 | GO:GO:0002183 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0005852 |
| GO:GO:0006412 | GO:GO:0006413 | GO:GO:0006417 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008135 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009733 | GO:GO:0009737 |
| GO:GO:0009738 | GO:GO:0009744 | GO:GO:0009749 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016282 |
| GO:GO:0019538 | GO:GO:0033290 | GO:GO:0034286 | GO:GO:0042788 | GO:GO:0045948 | InterPro:IPR037518 |
| InterPro:JAMM/MPN+_dom | MEROPS:M67.971 | HAMAP:MF_03007 | InterPro:MPN | RefSeq:NP_563880.1 | RefSeq:NP_973808.1 |
| ProteinID:OAP19628.1 | PFAM:PF01398 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50249 | PANTHER:PTHR10410 | PANTHER:PTHR10410:SF3 |
| UniProt:Q9C5Z2 | SMART:SM00232 | Symbol:TIF3H1 | UniParc:UPI0000001432 | InterPro:eIF3h | SEG:seg |
Description
TIF3H1Eukaryotic translation initiation factor 3 subunit H [Source:UniProtKB/Swiss-Prot;Acc:Q9C5Z2]
Coordinates
chr1:-:3607631..3610616
Molecular Weight (calculated)
38374.8 Da
IEP (calculated)
4.548
GRAVY (calculated)
-0.336
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: MATMARSFLQ AISKDEAVAP PLRVVQIEGL AVLKIIKHCK EFSPTLVTGQ LLGLDVGSVL EVTNCFPFPV RDDDEEIEAD GANYQLEMMR CLREVNVDNN
101: TVGWYQSTVL GSYQTVELIE TFMNYQENIK RCVCIIYDPS KADLGVLALK ALKLSDSFME LYRGGNFTGE KLREKNFSWM DIFEEIPIKV SNSALVSAFM
201: TELETDTPVS QGDYDRLHSS TTPFLENNME FLIKCMDDLS MEQQKFQYYY RNLSRQQAQQ QAWLQKRRTE NMARKSAGEE PLPEEDPSNP IFKAIPEPSR
301: LESFLITNQV SNFCGQINGV AGQNFSRLYL TKALHDN
101: TVGWYQSTVL GSYQTVELIE TFMNYQENIK RCVCIIYDPS KADLGVLALK ALKLSDSFME LYRGGNFTGE KLREKNFSWM DIFEEIPIKV SNSALVSAFM
201: TELETDTPVS QGDYDRLHSS TTPFLENNME FLIKCMDDLS MEQQKFQYYY RNLSRQQAQQ QAWLQKRRTE NMARKSAGEE PLPEEDPSNP IFKAIPEPSR
301: LESFLITNQV SNFCGQINGV AGQNFSRLYL TKALHDN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.