CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY28135
CDY29333
CDY46271
CDY50976
CDY71256

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10840.1	CDY28135	AT1G50030.1	23524850
AT1G10840.1	CDY29333	AT1G50030.1	23524850
AT1G10840.1	CDY46271	AT1G50030.1	23524850
AT1G10840.1	CDY50976	AT1G50030.1	23524850
AT1G10840.1	CDY71256	AT1G50030.1	23524850

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34854	Canola	cytosol	99.7	99.7
Bra031745.1-P	Field mustard	cytosol	99.41	99.41
CDX97915	Canola	cytosol	98.81	98.81
CDY19324	Canola	cytosol	98.52	98.52
CDY20600	Canola	cytosol	92.28	97.49
CDY20601	Canola	cytosol	92.28	97.49
AT1G10840.1	Thale cress	cytosol	97.33	97.33
CDY20970	Canola	cytosol	96.74	96.74
VIT_05s0062g01080.t01	Wine grape	cytosol	83.68	83.68
Solyc09g098280.2.1	Tomato	nucleus	83.09	82.84
PGSC0003DMT400055712	Potato	cytosol	83.09	82.84
PGSC0003DMT400011661	Potato	cytosol	83.09	82.84
KRH01550	Soybean	cytosol	82.79	82.79
Solyc12g098680.1.1	Tomato	cytosol	82.49	82.25
KRH70557	Soybean	endoplasmic reticulum	82.49	82.01
GSMUA_Achr6P27570_001	Banana	cytosol	80.42	80.42
TraesCS2A01G279200.1	Wheat	cytosol	72.11	78.9
GSMUA_Achr9P07190_001	Banana	cytosol	76.56	76.56
Os04t0376500-01	Rice	nucleus	78.64	76.37
Zm00001d025185_P001	Maize	extracellular, mitochondrion	76.85	75.51
TraesCS2B01G296700.1	Wheat	golgi, unclear	76.56	75.22
TraesCS2D01G278200.1	Wheat	cytosol	76.56	75.22
HORVU2Hr1G068360.8	Barley	cytosol, plastid	76.85	70.57
Zm00001d025193_P003	Maize	cytosol, mitochondrion, plastid	76.85	69.44
OQU81340	Sorghum	cytosol	72.4	67.4

Protein Annotations

MapMan:17.4.1.3.8	Gene3D:3.40.140.10	GO:A0A078HD08	UniProt:A0A078HD08	EnsemblPlants:CDY34673	ProteinID:CDY34673
ProteinID:CDY34673.1	GO:GO:0001731	GO:GO:0001732	GO:GO:0002183	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016282
GO:GO:0019538	GO:GO:0033290	EnsemblPlantsGene:GSBRNA2T00057134001	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	HAMAP:MF_03007
InterPro:MPN	PFAM:PF01398	PFscan:PS50249	PANTHER:PTHR10410	PANTHER:PTHR10410:SF3	SMART:SM00232
UniParc:UPI0004EB41E6	InterPro:eIF3h	SEG:seg	:	:	:

Description

BnaC08g42320DEukaryotic translation initiation factor 3 subunit H [Source:UniProtKB/TrEMBL;Acc:A0A078HD08]

Coordinates

chrLK032338:+:402203..404826

Molecular Weight (calculated)

38369.8 Da

IEP (calculated)

4.498

GRAVY (calculated)

-0.321

Length

337 amino acids

Sequence
(BLAST)

001: MATMARSFLQ AISKDEAVAP PLRVVQIEGL AVLKIIKHCK EFAPTLVTGQ LLGLDVGSVL EVTNCFPFPV RDDDEEIEAD GANYQLEMMR CLREVNVDNN
101: TVGWYQSTVL GSYQTVELIE TFMNYQENIK RCVCIIYDPS KADLGVLALK ALKLSDSFME LYRAGNFTGD KLREKNFSWM DIFEEIPIKV SNSALVSAFM
201: TELETDAPVS QGDYDRLQSS TTPFLENNME FLIKCMDDLS MEQQKFQYYY RNLSRQQAQQ QAWLQKRRTE NLARRSAGEE PLPEEDPSNP IFKPIPEPSR
301: LESFLITNQV SNFCGQINGV AGQNFSRLYL TKALHEN

Best Arabidopsis Sequence Match ( AT1G10840.1 )
(BLAST)

001: MATMARSFLQ AISKDEAVAP PLRVVQIEGL AVLKIIKHCK EFSPTLVTGQ LLGLDVGSVL EVTNCFPFPV RDDDEEIEAD GANYQLEMMR CLREVNVDNN
101: TVGWYQSTVL GSYQTVELIE TFMNYQENIK RCVCIIYDPS KADLGVLALK ALKLSDSFME LYRGGNFTGE KLREKNFSWM DIFEEIPIKV SNSALVSAFM
201: TELETDTPVS QGDYDRLHSS TTPFLENNME FLIKCMDDLS MEQQKFQYYY RNLSRQQAQQ QAWLQKRRTE NMARKSAGEE PLPEEDPSNP IFKAIPEPSR
301: LESFLITNQV SNFCGQINGV AGQNFSRLYL TKALHDN

Arabidopsis Description

TIF3H1Eukaryotic translation initiation factor 3 subunit H [Source:UniProtKB/Swiss-Prot;Acc:Q9C5Z2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.