Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G227600.1 | |
| TraesCS1B01G241900.3 | |
| TraesCS1D01G229300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G10840.1 | TraesCS1A01G227600.1 | AT1G50030.1 | 23524850 |
| AT1G10840.1 | TraesCS1B01G241900.3 | AT1G50030.1 | 23524850 |
| AT1G10840.1 | TraesCS1D01G229300.1 | AT1G50030.1 | 23524850 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G278200.1 | Wheat | cytosol | 99.35 | 89.21 |
| TraesCS2B01G296700.1 | Wheat | golgi, unclear | 99.35 | 89.21 |
| Os04t0376500-01 | Rice | nucleus | 96.43 | 85.59 |
| Zm00001d025185_P001 | Maize | extracellular, mitochondrion | 94.81 | 85.13 |
| HORVU2Hr1G068360.8 | Barley | cytosol, plastid | 99.68 | 83.65 |
| GSMUA_Achr6P27570_001 | Banana | cytosol | 88.31 | 80.71 |
| Zm00001d025193_P003 | Maize | cytosol, mitochondrion, plastid | 94.48 | 78.02 |
| VIT_05s0062g01080.t01 | Wine grape | cytosol | 83.77 | 76.56 |
| OQU81340 | Sorghum | cytosol | 89.94 | 76.52 |
| KRH01550 | Soybean | cytosol | 83.44 | 76.26 |
| KRH70557 | Soybean | endoplasmic reticulum | 83.44 | 75.81 |
| GSMUA_Achr9P07190_001 | Banana | cytosol | 82.47 | 75.37 |
| PGSC0003DMT400011661 | Potato | cytosol | 81.82 | 74.56 |
| Solyc12g098680.1.1 | Tomato | cytosol | 81.17 | 73.96 |
| PGSC0003DMT400055712 | Potato | cytosol | 80.84 | 73.67 |
| Solyc09g098280.2.1 | Tomato | nucleus | 80.84 | 73.67 |
| CDX97915 | Canola | cytosol | 79.55 | 72.7 |
| Bra031745.1-P | Field mustard | cytosol | 79.55 | 72.7 |
| CDY20601 | Canola | cytosol | 75.0 | 72.41 |
| CDY20600 | Canola | cytosol | 75.0 | 72.41 |
| CDY34854 | Canola | cytosol | 79.22 | 72.4 |
| CDY19324 | Canola | cytosol | 79.22 | 72.4 |
| AT1G10840.1 | Thale cress | cytosol | 78.9 | 72.11 |
| Bra019898.1-P | Field mustard | cytosol | 78.9 | 72.11 |
| CDY34673 | Canola | cytosol | 78.9 | 72.11 |
| Bra018420.1-P | Field mustard | cytosol | 78.57 | 71.81 |
| CDY20970 | Canola | cytosol | 78.57 | 71.81 |
Protein Annotations
| MapMan:17.4.1.3.8 | Gene3D:3.40.140.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0005840 | GO:GO:0005852 | GO:GO:0006412 | GO:GO:0008135 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009733 | GO:GO:0009737 | GO:GO:0009744 |
| GO:GO:0009749 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0034286 | GO:GO:0042788 | GO:GO:0045948 |
| InterPro:IPR037518 | InterPro:JAMM/MPN+_dom | HAMAP:MF_03007 | InterPro:MPN | PFAM:PF01398 | PFscan:PS50249 |
| PANTHER:PTHR10410 | PANTHER:PTHR10410:SF3 | SMART:SM00232 | EnsemblPlantsGene:TraesCS2A01G279200 | EnsemblPlants:TraesCS2A01G279200.1 | TIGR:cd08065 |
| InterPro:eIF3h | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2A:-:464165439..464171275
Molecular Weight (calculated)
35253.1 Da
IEP (calculated)
4.573
GRAVY (calculated)
-0.408
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVLKIIKHC EEFAPALVTG QLLGLDVGSV LEVTNCFPFP IREDDEEADA DGANYQLEMM RCLREVNVDN NTVGWYQSCL LGSFQTVELI ETFMNYQENI
101: RRCVCIVYDP SRSSQGVLAL KALKLTDSFM DLYRNNGLTG EKLREKKLSW VDIFEEIPIK VSNSALVSAF MKELEPESPV SQCDFDRLKL STAPFMERNL
201: EFMIGCMDGL SSEQNKFQYY YRNLGRQQSQ QQAWLQKRRQ ENMSRKAAGE EPLPEEDPSN PIFKPLPEPS RLEGYLVTNQ ISSYCNHING VAGQSFNRLY
301: LMKALQED
101: RRCVCIVYDP SRSSQGVLAL KALKLTDSFM DLYRNNGLTG EKLREKKLSW VDIFEEIPIK VSNSALVSAF MKELEPESPV SQCDFDRLKL STAPFMERNL
201: EFMIGCMDGL SSEQNKFQYY YRNLGRQQSQ QQAWLQKRRQ ENMSRKAAGE EPLPEEDPSN PIFKPLPEPS RLEGYLVTNQ ISSYCNHING VAGQSFNRLY
301: LMKALQED
001: MMRCLREVNV DNNTVGWYQS TVLGSYQTVE LIETFMNYQE NIKRCVCIIY DPSKADLGVL ALKALKLSDS FMELYRGGNF TGEKLREKNF SWMDIFEEIP
101: IKVSNSALVS AFMTELETDT PVSQGDYDRL HSSTTPFLEN NMEFLIKCMD DLSMEQQKFQ YYYRNLSRQQ AQQQAWLQKR RTENMARKSA GEEPLPEEDP
201: SNPIFKAIPE PSRLESFLIT NQVSNFCGQI NGVAGQNFSR LYLTKALHDN
101: IKVSNSALVS AFMTELETDT PVSQGDYDRL HSSTTPFLEN NMEFLIKCMD DLSMEQQKFQ YYYRNLSRQQ AQQQAWLQKR RTENMARKSA GEEPLPEEDP
201: SNPIFKAIPE PSRLESFLIT NQVSNFCGQI NGVAGQNFSR LYLTKALHDN
Arabidopsis Description
TIF3H1Eukaryotic translation initiation factor 3 subunit H [Source:UniProtKB/Swiss-Prot;Acc:Q9C5Z2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.