Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
- plastid 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_03s0088g00450.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G10840.1 | VIT_03s0088g00450.t01 | AT1G50030.1 | 23524850 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400011661 | Potato | cytosol | 92.28 | 92.01 |
| KRH70557 | Soybean | endoplasmic reticulum | 92.28 | 91.74 |
| Solyc12g098680.1.1 | Tomato | cytosol | 91.99 | 91.72 |
| KRH01550 | Soybean | cytosol | 91.69 | 91.69 |
| PGSC0003DMT400055712 | Potato | cytosol | 91.1 | 90.83 |
| Solyc09g098280.2.1 | Tomato | nucleus | 91.1 | 90.83 |
| GSMUA_Achr6P27570_001 | Banana | cytosol | 87.24 | 87.24 |
| Bra031745.1-P | Field mustard | cytosol | 84.27 | 84.27 |
| AT1G10840.1 | Thale cress | cytosol | 84.27 | 84.27 |
| CDY20600 | Canola | cytosol | 79.53 | 84.01 |
| CDY20601 | Canola | cytosol | 79.53 | 84.01 |
| CDX97915 | Canola | cytosol | 83.98 | 83.98 |
| CDY34854 | Canola | cytosol | 83.98 | 83.98 |
| TraesCS2A01G279200.1 | Wheat | cytosol | 76.56 | 83.77 |
| CDY34673 | Canola | cytosol | 83.68 | 83.68 |
| CDY20970 | Canola | cytosol | 83.68 | 83.68 |
| Bra019898.1-P | Field mustard | cytosol | 83.68 | 83.68 |
| Bra018420.1-P | Field mustard | cytosol | 83.68 | 83.68 |
| GSMUA_Achr9P07190_001 | Banana | cytosol | 83.38 | 83.38 |
| CDY19324 | Canola | cytosol | 83.38 | 83.38 |
| Zm00001d025185_P001 | Maize | extracellular, mitochondrion | 83.38 | 81.92 |
| Os04t0376500-01 | Rice | nucleus | 84.27 | 81.84 |
| TraesCS2B01G296700.1 | Wheat | golgi, unclear | 82.2 | 80.76 |
| TraesCS2D01G278200.1 | Wheat | cytosol | 81.9 | 80.47 |
| HORVU2Hr1G068360.8 | Barley | cytosol, plastid | 82.49 | 75.75 |
| Zm00001d025193_P003 | Maize | cytosol, mitochondrion, plastid | 82.49 | 74.53 |
| OQU81340 | Sorghum | cytosol | 78.64 | 73.2 |
Protein Annotations
| EntrezGene:100248036 | wikigene:100248036 | MapMan:17.4.1.3.8 | Gene3D:3.40.140.10 | ProteinID:CBI39440 | ProteinID:CBI39440.3 |
| UniProt:D7U9M6 | EMBL:FN596745 | GO:GO:0001731 | GO:GO:0001732 | GO:GO:0002183 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005852 | GO:GO:0006412 | GO:GO:0006413 |
| GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0016282 | GO:GO:0019538 | GO:GO:0033290 | InterPro:IPR037518 | InterPro:JAMM/MPN+_dom | EntrezGene:LOC100248036 |
| wikigene:LOC100248036 | MEROPS:M67.971 | HAMAP:MF_03007 | InterPro:MPN | PFAM:PF01398 | PFscan:PS50249 |
| PANTHER:PTHR10410 | PANTHER:PTHR10410:SF3 | SMART:SM00232 | TIGR:TC53388 | TIGR:TC58716 | UniParc:UPI00019833B6 |
| ArrayExpress:VIT_05s0062g01080 | EnsemblPlantsGene:VIT_05s0062g01080 | EnsemblPlants:VIT_05s0062g01080.t01 | unigene:Vvi.571 | RefSeq:XP_002266909 | RefSeq:XP_002266909.1 |
| InterPro:eIF3h | : | : | : | : | : |
Description
Eukaryotic translation initiation factor 3 subunit H [Source:UniProtKB/TrEMBL;Acc:D7U9M6]
Coordinates
chr5:-:19721309..19736782
Molecular Weight (calculated)
38724.3 Da
IEP (calculated)
4.463
GRAVY (calculated)
-0.333
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: MANTMARSFL QVAATEEVAS PLRVVQIEGL VILKIIKHCK EFSPALVTGQ LLGLDVGSVL EVTNCFPFPI REEDEEIEAD GANYQLEMMR CLREVNVDNN
101: TVGWYQSTLL GSFQTVELIE TFMNYQENIR RCVCIIYDPS RSNQGVLALK ALKLSDSFME LYRNNNFTGE KLREKNLSWV DIFEEIPIKV SNSALISAFM
201: TELEADTPVT QCDYDRLQLS TNPYMERNLE FLIECMDDLS MEQQKFQFYY RNLSRQQGQQ QAWLQKRRAE NMARKTAGED PLPEEDPANP IFKPIPEPSR
301: LDSFLITNQI SNYCNQINGV AGQSFSRLYL MKALHEN
101: TVGWYQSTLL GSFQTVELIE TFMNYQENIR RCVCIIYDPS RSNQGVLALK ALKLSDSFME LYRNNNFTGE KLREKNLSWV DIFEEIPIKV SNSALISAFM
201: TELEADTPVT QCDYDRLQLS TNPYMERNLE FLIECMDDLS MEQQKFQFYY RNLSRQQGQQ QAWLQKRRAE NMARKTAGED PLPEEDPANP IFKPIPEPSR
301: LDSFLITNQI SNYCNQINGV AGQSFSRLYL MKALHEN
001: MATMARSFLQ AISKDEAVAP PLRVVQIEGL AVLKIIKHCK EFSPTLVTGQ LLGLDVGSVL EVTNCFPFPV RDDDEEIEAD GANYQLEMMR CLREVNVDNN
101: TVGWYQSTVL GSYQTVELIE TFMNYQENIK RCVCIIYDPS KADLGVLALK ALKLSDSFME LYRGGNFTGE KLREKNFSWM DIFEEIPIKV SNSALVSAFM
201: TELETDTPVS QGDYDRLHSS TTPFLENNME FLIKCMDDLS MEQQKFQYYY RNLSRQQAQQ QAWLQKRRTE NMARKSAGEE PLPEEDPSNP IFKAIPEPSR
301: LESFLITNQV SNFCGQINGV AGQNFSRLYL TKALHDN
101: TVGWYQSTVL GSYQTVELIE TFMNYQENIK RCVCIIYDPS KADLGVLALK ALKLSDSFME LYRGGNFTGE KLREKNFSWM DIFEEIPIKV SNSALVSAFM
201: TELETDTPVS QGDYDRLHSS TTPFLENNME FLIKCMDDLS MEQQKFQYYY RNLSRQQAQQ QAWLQKRRTE NMARKSAGEE PLPEEDPSNP IFKAIPEPSR
301: LESFLITNQV SNFCGQINGV AGQNFSRLYL TKALHDN
Arabidopsis Description
TIF3H1Eukaryotic translation initiation factor 3 subunit H [Source:UniProtKB/Swiss-Prot;Acc:Q9C5Z2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.