Factsheet for Os04t0376500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
nucleus: 26035336
plastid: 27992503

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os05t0235300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10840.1	Os05t0235300-01	AT1G50030.1	23524850

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G279200.1	Wheat	cytosol	85.59	96.43
Zm00001d025185_P001	Maize	extracellular, mitochondrion	93.95	95.04
TraesCS2B01G296700.1	Wheat	golgi, unclear	93.37	94.46
TraesCS2D01G278200.1	Wheat	cytosol	93.08	94.17
HORVU2Hr1G068360.8	Barley	cytosol, plastid	93.37	88.28
GSMUA_Achr6P27570_001	Banana	cytosol	85.59	88.13
OQU81340	Sorghum	cytosol	89.91	86.19
Zm00001d025193_P003	Maize	cytosol, mitochondrion, plastid	92.51	86.06
VIT_05s0062g01080.t01	Wine grape	cytosol	81.84	84.27
KRH01550	Soybean	cytosol	80.98	83.38
KRH70557	Soybean	endoplasmic reticulum	80.98	82.89
GSMUA_Achr9P07190_001	Banana	cytosol	80.4	82.79
PGSC0003DMT400011661	Potato	cytosol	80.12	82.25
Solyc12g098680.1.1	Tomato	cytosol	79.54	81.66
PGSC0003DMT400055712	Potato	cytosol	78.1	80.18
Solyc09g098280.2.1	Tomato	nucleus	78.1	80.18
CDY20601	Canola	cytosol	72.91	79.31
CDY20600	Canola	cytosol	72.91	79.31
CDX97915	Canola	cytosol	76.95	79.23
Bra031745.1-P	Field mustard	cytosol	76.95	79.23
CDY34854	Canola	cytosol	76.66	78.93
CDY19324	Canola	cytosol	76.66	78.93
AT1G10840.1	Thale cress	cytosol	76.37	78.64
Bra019898.1-P	Field mustard	cytosol	76.37	78.64
CDY34673	Canola	cytosol	76.37	78.64
Bra018420.1-P	Field mustard	cytosol	76.08	78.34
CDY20970	Canola	cytosol	76.08	78.34

Protein Annotations

MapMan:17.4.1.3.8	Gene3D:3.40.140.10	EntrezGene:4335611	EMBL:AK103713	ProteinID:BAF14496.1	ProteinID:BAS88855.1
ProteinID:BAS88856.1	ProteinID:CAE04596.2	ProteinID:EAZ30447.1	GO:GO:0001732	GO:GO:0002183	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0005852
GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009733	GO:GO:0009737	GO:GO:0009744	GO:GO:0009749	GO:GO:0009987
GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0033290	GO:GO:0034286	GO:GO:0042788
GO:GO:0045948	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	MEROPS:M67.971	HAMAP:MF_03007	InterPro:MPN
EnsemblPlantsGene:Os04g0376500	EnsemblPlants:Os04t0376500-01	PFAM:PF01398	PFscan:PS50249	PANTHER:PTHR10410	PANTHER:PTHR10410:SF3
UniProt:Q7XMI6	SMART:SM00232	UniParc:UPI00001B186D	RefSeq:XP_015633560.1	InterPro:eIF3h	SEG:seg

Description

EUKARYOTIC INITIATION FACTOR 3HSimilar to Eukaryotic translation initiation factor 3 subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h). (Os04t0376500-01);Similar to eukaryotic translation initiation factor 3 subunit 3. (Os04t0376500-02)

Coordinates

chr4:-:18401260..18405688

Molecular Weight (calculated)

39158.6 Da

IEP (calculated)

4.473

GRAVY (calculated)

-0.357

Length

347 amino acids

Sequence
(BLAST)

001: MANPAAAAGP SGGARSFLQA VSTVTEEAPS PLRVVQMEGL AVLKIIKHCE EFAPALVTGQ LLGLDVGSVL EVTNCFPFPM REDDEEADAD GANYQLEMMR
101: CLREVNVDNN TVGWYQSCLL GSFQTVELIE TFMNYQENIR RCVCIVYDPS RSNQGVLALK ALKLTDSFMD LYRNNGLTGE KLREKKLSWV DIFEEIPIKV
201: SNSALVSAFM TELEPESPVS QCDFDRLKLS TAPFMERNLE FLIGCMDDLS SEQNKFQYYY RNVSRQQSQQ QAWLQKRRQE NMARKAAGEE PLPEEDPSNP
301: IFKPIPEPSR LEGYLVTNQI SSYCNHINGV AGQNFNRLYL MKALQED

Best Arabidopsis Sequence Match ( AT1G10840.1 )
(BLAST)

001: MATMARSFLQ AISKDEAVAP PLRVVQIEGL AVLKIIKHCK EFSPTLVTGQ LLGLDVGSVL EVTNCFPFPV RDDDEEIEAD GANYQLEMMR CLREVNVDNN
101: TVGWYQSTVL GSYQTVELIE TFMNYQENIK RCVCIIYDPS KADLGVLALK ALKLSDSFME LYRGGNFTGE KLREKNFSWM DIFEEIPIKV SNSALVSAFM
201: TELETDTPVS QGDYDRLHSS TTPFLENNME FLIKCMDDLS MEQQKFQYYY RNLSRQQAQQ QAWLQKRRTE NMARKSAGEE PLPEEDPSNP IFKAIPEPSR
301: LESFLITNQV SNFCGQINGV AGQNFSRLYL TKALHDN

Arabidopsis Description

TIF3H1Eukaryotic translation initiation factor 3 subunit H [Source:UniProtKB/Swiss-Prot;Acc:Q9C5Z2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.