Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
- cytosol 2
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d037950_P004 | |
| Zm00001d037951_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G10840.1 | Zm00001d037950_P004 | AT1G50030.1 | 23524850 |
| AT1G10840.1 | Zm00001d037951_P001 | AT1G50030.1 | 23524850 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d025185_P001 | Maize | extracellular, mitochondrion | 89.54 | 97.38 |
| TraesCS2A01G279200.1 | Wheat | cytosol | 78.02 | 94.48 |
| Os04t0376500-01 | Rice | nucleus | 86.06 | 92.51 |
| TraesCS2B01G296700.1 | Wheat | golgi, unclear | 83.91 | 91.25 |
| TraesCS2D01G278200.1 | Wheat | cytosol | 83.65 | 90.96 |
| GSMUA_Achr6P27570_001 | Banana | cytosol | 78.55 | 86.94 |
| OQU81340 | Sorghum | cytosol | 83.91 | 86.46 |
| HORVU2Hr1G068360.8 | Barley | cytosol, plastid | 84.99 | 86.38 |
| VIT_05s0062g01080.t01 | Wine grape | cytosol | 74.53 | 82.49 |
| GSMUA_Achr9P07190_001 | Banana | cytosol | 73.99 | 81.9 |
| KRH01550 | Soybean | cytosol | 73.99 | 81.9 |
| KRH70557 | Soybean | endoplasmic reticulum | 73.99 | 81.42 |
| PGSC0003DMT400011661 | Potato | cytosol | 72.65 | 80.18 |
| Solyc12g098680.1.1 | Tomato | cytosol | 72.12 | 79.59 |
| PGSC0003DMT400055712 | Potato | cytosol | 71.58 | 78.99 |
| Solyc09g098280.2.1 | Tomato | nucleus | 71.58 | 78.99 |
| CDY20601 | Canola | cytosol | 66.49 | 77.74 |
| CDY20600 | Canola | cytosol | 66.49 | 77.74 |
| Bra031745.1-P | Field mustard | cytosol | 69.97 | 77.45 |
| CDX97915 | Canola | cytosol | 69.97 | 77.45 |
| CDY19324 | Canola | cytosol | 69.71 | 77.15 |
| Bra018420.1-P | Field mustard | cytosol | 69.71 | 77.15 |
| CDY20970 | Canola | cytosol | 69.71 | 77.15 |
| CDY34854 | Canola | cytosol | 69.71 | 77.15 |
| AT1G10840.1 | Thale cress | cytosol | 69.44 | 76.85 |
| Bra019898.1-P | Field mustard | cytosol | 69.44 | 76.85 |
| CDY34673 | Canola | cytosol | 69.44 | 76.85 |
Protein Annotations
| EntrezGene:100272851 | MapMan:17.4.1.3.8 | Gene3D:3.40.140.10 | UniProt:A0A1D6J5G8 | ProteinID:AQK43181.1 | GO:GO:0001731 |
| GO:GO:0001732 | GO:GO:0002183 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005852 | GO:GO:0006412 | GO:GO:0006413 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016282 | GO:GO:0019538 | GO:GO:0033290 |
| InterPro:IPR037518 | InterPro:JAMM/MPN+_dom | HAMAP:MF_03007 | InterPro:MPN | PFAM:PF01398 | PFscan:PS50249 |
| PANTHER:PTHR10410 | PANTHER:PTHR10410:SF3 | SMART:SM00232 | SignalP:SignalP-noTM | UniParc:UPI0008431FA8 | EnsemblPlantsGene:Zm00001d025193 |
| EnsemblPlants:Zm00001d025193_P003 | EnsemblPlants:Zm00001d025193_T003 | InterPro:eIF3h | SEG:seg | : | : |
Description
Eukaryotic translation initiation factor 3 subunit H
Coordinates
chr10:+:108468681..108473127
Molecular Weight (calculated)
42077.4 Da
IEP (calculated)
4.695
GRAVY (calculated)
-0.268
Length
373 amino acids
Sequence
(BLAST)
(BLAST)
001: MANCKGLPIF RSLSLASLSS SRALTLDLVG WLAAAAPGGV RSFLQAVSTV TEETRTPLRV VQMEGLAVLK IIKHCEEFAP ALVTGQLLGL DVGSVLEVTN
101: CFPFPMREED DEADADGANY QLEMMRCLRE VNVDNNTIGW YQSCLLGSFQ TVELIETFMN YQESIRRCVC IVYDPSRSSQ GVLALKALKL TDSFMDLYRN
201: NGLTGEKLRE KKLSWVDIFE EIPIKVSNSA LVSAFMKELE PESPVTQCDL DRLKLSTAPF MERNLEFLIG CMDDLSSEQN KFQYYNRNLS RQQSQQQAWL
301: QKRRQENMAR KAAGEEPLPE EDPSNPIFKP IPEPSRLEGY LVTNQISSYC NHINGVAGQN FDRLYLMKAL HED
101: CFPFPMREED DEADADGANY QLEMMRCLRE VNVDNNTIGW YQSCLLGSFQ TVELIETFMN YQESIRRCVC IVYDPSRSSQ GVLALKALKL TDSFMDLYRN
201: NGLTGEKLRE KKLSWVDIFE EIPIKVSNSA LVSAFMKELE PESPVTQCDL DRLKLSTAPF MERNLEFLIG CMDDLSSEQN KFQYYNRNLS RQQSQQQAWL
301: QKRRQENMAR KAAGEEPLPE EDPSNPIFKP IPEPSRLEGY LVTNQISSYC NHINGVAGQN FDRLYLMKAL HED
001: MATMARSFLQ AISKDEAVAP PLRVVQIEGL AVLKIIKHCK EFSPTLVTGQ LLGLDVGSVL EVTNCFPFPV RDDDEEIEAD GANYQLEMMR CLREVNVDNN
101: TVGWYQSTVL GSYQTVELIE TFMNYQENIK RCVCIIYDPS KADLGVLALK ALKLSDSFME LYRGGNFTGE KLREKNFSWM DIFEEIPIKV SNSALVSAFM
201: TELETDTPVS QGDYDRLHSS TTPFLENNME FLIKCMDDLS MEQQKFQYYY RNLSRQQAQQ QAWLQKRRTE NMARKSAGEE PLPEEDPSNP IFKAIPEPSR
301: LESFLITNQV SNFCGQINGV AGQNFSRLYL TKALHDN
101: TVGWYQSTVL GSYQTVELIE TFMNYQENIK RCVCIIYDPS KADLGVLALK ALKLSDSFME LYRGGNFTGE KLREKNFSWM DIFEEIPIKV SNSALVSAFM
201: TELETDTPVS QGDYDRLHSS TTPFLENNME FLIKCMDDLS MEQQKFQYYY RNLSRQQAQQ QAWLQKRRTE NMARKSAGEE PLPEEDPSNP IFKAIPEPSR
301: LESFLITNQV SNFCGQINGV AGQNFSRLYL TKALHDN
Arabidopsis Description
TIF3H1Eukaryotic translation initiation factor 3 subunit H [Source:UniProtKB/Swiss-Prot;Acc:Q9C5Z2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.