CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plasma membrane 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH27589
KRH77911

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10840.1	KRH27589	AT1G50030.1	23524850
AT1G10840.1	KRH77911	AT1G50030.1	23524850

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70557	Soybean	endoplasmic reticulum	99.7	99.11
VIT_05s0062g01080.t01	Wine grape	cytosol	91.69	91.69
PGSC0003DMT400011661	Potato	cytosol	90.21	89.94
Solyc12g098680.1.1	Tomato	cytosol	89.61	89.35
Solyc09g098280.2.1	Tomato	nucleus	89.32	89.05
PGSC0003DMT400055712	Potato	cytosol	89.32	89.05
GSMUA_Achr6P27570_001	Banana	cytosol	84.87	84.87
TraesCS2A01G279200.1	Wheat	cytosol	76.26	83.44
Bra031745.1-P	Field mustard	cytosol	83.38	83.38
AT1G10840.1	Thale cress	cytosol	83.38	83.38
CDX97915	Canola	cytosol	83.09	83.09
CDY34854	Canola	cytosol	83.09	83.09
Bra018420.1-P	Field mustard	cytosol	82.79	82.79
CDY34673	Canola	cytosol	82.79	82.79
CDY20970	Canola	cytosol	82.79	82.79
Bra019898.1-P	Field mustard	cytosol	82.79	82.79
CDY20601	Canola	cytosol	78.34	82.76
CDY20600	Canola	cytosol	78.34	82.76
CDY19324	Canola	cytosol	82.49	82.49
GSMUA_Achr9P07190_001	Banana	cytosol	81.6	81.6
Os04t0376500-01	Rice	nucleus	83.38	80.98
Zm00001d025185_P001	Maize	extracellular, mitochondrion	82.2	80.76
TraesCS2B01G296700.1	Wheat	golgi, unclear	81.9	80.47
TraesCS2D01G278200.1	Wheat	cytosol	81.9	80.47
HORVU2Hr1G068360.8	Barley	cytosol, plastid	82.2	75.48
Zm00001d025193_P003	Maize	cytosol, mitochondrion, plastid	81.9	73.99
OQU81340	Sorghum	cytosol	77.74	72.38

Protein Annotations

EntrezGene:100814297	MapMan:17.4.1.3.8	Gene3D:3.40.140.10	EMBL:ACUP02011521	EnsemblPlantsGene:GLYMA_18G284200	GO:GO:0001731
GO:GO:0001732	GO:GO:0002183	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0033290
UniProt:I1N504	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	EnsemblPlants:KRH01550	ProteinID:KRH01550	ProteinID:KRH01550.1
MEROPS:M67.971	HAMAP:MF_03007	InterPro:MPN	PFAM:PF01398	PFscan:PS50249	PANTHER:PTHR10410
PANTHER:PTHR10410:SF3	SMART:SM00232	UniParc:UPI0000E6475E	InterPro:eIF3h	SEG:seg	:

Description

hypothetical protein

Coordinates

chr18:-:56482736..56486831

Molecular Weight (calculated)

38627.0 Da

IEP (calculated)

4.441

GRAVY (calculated)

-0.373

Length

337 amino acids

Sequence
(BLAST)

001: MATTPARSFL QVAATEEAAP PLRVVQIEGL VILKIIKHCK DHSPSLVTGQ LLGLDVGSVL EVTNCFPFPM REEDEEIEAD GANYQLEMMR CLREVNVDNN
101: TVGWYQSTLL GSFQTVELIE TFMNYQENIR RCVCIIYDPS RSDQGVLALK ALKLSDSFME LYRSNNFTGE KLREKNLSWV DIFEEIPIKV SNSALISAFM
201: TELEPDTPVT QCDYDRLQLS TSSLMERNTE FLIECMDDLS LEQQKFQFYY RSLSRQQAQQ QAWLQKRRTE NMARKAAGEE PLPEEDPSNP IFKPLPEPSR
301: LESFLITNQI SNYCNQINGV SGQSFNRLYL MKALHED

Best Arabidopsis Sequence Match ( AT1G10840.1 )
(BLAST)

001: MATMARSFLQ AISKDEAVAP PLRVVQIEGL AVLKIIKHCK EFSPTLVTGQ LLGLDVGSVL EVTNCFPFPV RDDDEEIEAD GANYQLEMMR CLREVNVDNN
101: TVGWYQSTVL GSYQTVELIE TFMNYQENIK RCVCIIYDPS KADLGVLALK ALKLSDSFME LYRGGNFTGE KLREKNFSWM DIFEEIPIKV SNSALVSAFM
201: TELETDTPVS QGDYDRLHSS TTPFLENNME FLIKCMDDLS MEQQKFQYYY RNLSRQQAQQ QAWLQKRRTE NMARKSAGEE PLPEEDPSNP IFKAIPEPSR
301: LESFLITNQV SNFCGQINGV AGQNFSRLYL TKALHDN

Arabidopsis Description

TIF3H1Eukaryotic translation initiation factor 3 subunit H [Source:UniProtKB/Swiss-Prot;Acc:Q9C5Z2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.