Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| OQU77830 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G10840.1 | OQU77830 | AT1G50030.1 | 23524850 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d025185_P001 | Maize | extracellular, mitochondrion | 88.67 | 93.59 |
| TraesCS2A01G279200.1 | Wheat | cytosol | 76.52 | 89.94 |
| Os04t0376500-01 | Rice | nucleus | 86.19 | 89.91 |
| TraesCS2B01G296700.1 | Wheat | golgi, unclear | 83.98 | 88.63 |
| TraesCS2D01G278200.1 | Wheat | cytosol | 83.7 | 88.34 |
| Zm00001d025193_P003 | Maize | cytosol, mitochondrion, plastid | 86.46 | 83.91 |
| HORVU2Hr1G068360.8 | Barley | cytosol, plastid | 83.98 | 82.83 |
| GSMUA_Achr6P27570_001 | Banana | cytosol | 77.07 | 82.79 |
| VIT_05s0062g01080.t01 | Wine grape | cytosol | 73.2 | 78.64 |
| GSMUA_Achr9P07190_001 | Banana | cytosol | 72.65 | 78.04 |
| KRH01550 | Soybean | cytosol | 72.38 | 77.74 |
| KRH70557 | Soybean | endoplasmic reticulum | 72.38 | 77.29 |
| PGSC0003DMT400011661 | Potato | cytosol | 71.55 | 76.63 |
| Solyc12g098680.1.1 | Tomato | cytosol | 70.99 | 76.04 |
| PGSC0003DMT400055712 | Potato | cytosol | 70.17 | 75.15 |
| Solyc09g098280.2.1 | Tomato | nucleus | 70.17 | 75.15 |
| CDY20601 | Canola | cytosol | 64.64 | 73.35 |
| CDY20600 | Canola | cytosol | 64.64 | 73.35 |
| Bra031745.1-P | Field mustard | cytosol | 67.96 | 73.0 |
| CDX97915 | Canola | cytosol | 67.96 | 73.0 |
| Bra018420.1-P | Field mustard | cytosol | 67.68 | 72.7 |
| CDY19324 | Canola | cytosol | 67.68 | 72.7 |
| CDY34854 | Canola | cytosol | 67.68 | 72.7 |
| CDY20970 | Canola | cytosol | 67.68 | 72.7 |
| AT1G10840.1 | Thale cress | cytosol | 67.4 | 72.4 |
| CDY34673 | Canola | cytosol | 67.4 | 72.4 |
| Bra019898.1-P | Field mustard | cytosol | 67.4 | 72.4 |
Protein Annotations
| MapMan:17.4.1.3.8 | Gene3D:3.40.140.10 | UniProt:A0A1Z5RC59 | GO:GO:0001731 | GO:GO:0001732 | GO:GO:0002183 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 |
| GO:GO:0005852 | GO:GO:0006412 | GO:GO:0006413 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009733 | GO:GO:0009737 | GO:GO:0009744 | GO:GO:0009749 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016282 | GO:GO:0019538 | GO:GO:0033290 | GO:GO:0034286 |
| GO:GO:0042788 | GO:GO:0045948 | InterPro:IPR037518 | InterPro:JAMM/MPN+_dom | HAMAP:MF_03007 | InterPro:MPN |
| EnsemblPlants:OQU81340 | ProteinID:OQU81340 | ProteinID:OQU81340.1 | PFAM:PF01398 | PFscan:PS50249 | PANTHER:PTHR10410 |
| PANTHER:PTHR10410:SF3 | EnsemblPlantsGene:SORBI_3006G044600 | UniParc:UPI000B8BAE42 | InterPro:eIF3h | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr6:-:31237287..31244123
Molecular Weight (calculated)
41122.3 Da
IEP (calculated)
4.650
GRAVY (calculated)
-0.330
Length
362 amino acids
Sequence
(BLAST)
(BLAST)
001: MANPAAPGGM RSFLQAVSTV TEEAPTPLRV VQMEGLAVLK IIKHCEEFAP ALVTGQLLGL DVGSVLEVTN CFPFPIREED DEADADGANY QLEMMRCLRE
101: VNVDNNTIGC VMVQERKLYP ESTIEAFILA NQSPFVDMVY HTRQSCIMIY DESIRRCVCI VYDPSRSSQG VLALKALKLT DSFMDLYRNN GLTGEKLREK
201: KLSWVDIFEE IPIKVSNSAL VSAFMKELEP ESPVTQCDFD RLKLSTAPFM ERNLEFLIGC MDDLSSEQNK FQYYYRNLSR QQSQQQAWLQ KRRQENMARK
301: AAGEEPLPEE DPSNPIFKPI PEPSRLEGYL VTNQISSYCN HINGVAGQNF NRLYLMKALH ED
101: VNVDNNTIGC VMVQERKLYP ESTIEAFILA NQSPFVDMVY HTRQSCIMIY DESIRRCVCI VYDPSRSSQG VLALKALKLT DSFMDLYRNN GLTGEKLREK
201: KLSWVDIFEE IPIKVSNSAL VSAFMKELEP ESPVTQCDFD RLKLSTAPFM ERNLEFLIGC MDDLSSEQNK FQYYYRNLSR QQSQQQAWLQ KRRQENMARK
301: AAGEEPLPEE DPSNPIFKPI PEPSRLEGYL VTNQISSYCN HINGVAGQNF NRLYLMKALH ED
001: MATMARSFLQ AISKDEAVAP PLRVVQIEGL AVLKIIKHCK EFSPTLVTGQ LLGLDVGSVL EVTNCFPFPV RDDDEEIEAD GANYQLEMMR CLREVNVDNN
101: TVGWYQSTVL GSYQTVELIE TFMNYQENIK RCVCIIYDPS KADLGVLALK ALKLSDSFME LYRGGNFTGE KLREKNFSWM DIFEEIPIKV SNSALVSAFM
201: TELETDTPVS QGDYDRLHSS TTPFLENNME FLIKCMDDLS MEQQKFQYYY RNLSRQQAQQ QAWLQKRRTE NMARKSAGEE PLPEEDPSNP IFKAIPEPSR
301: LESFLITNQV SNFCGQINGV AGQNFSRLYL TKALHDN
101: TVGWYQSTVL GSYQTVELIE TFMNYQENIK RCVCIIYDPS KADLGVLALK ALKLSDSFME LYRGGNFTGE KLREKNFSWM DIFEEIPIKV SNSALVSAFM
201: TELETDTPVS QGDYDRLHSS TTPFLENNME FLIKCMDDLS MEQQKFQYYY RNLSRQQAQQ QAWLQKRRTE NMARKSAGEE PLPEEDPSNP IFKAIPEPSR
301: LESFLITNQV SNFCGQINGV AGQNFSRLYL TKALHDN
Arabidopsis Description
TIF3H1Eukaryotic translation initiation factor 3 subunit H [Source:UniProtKB/Swiss-Prot;Acc:Q9C5Z2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.