Factsheet for Zm00001d025185_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

mitochondrion 1
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d037950_P004
Zm00001d037951_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10840.1	Zm00001d037950_P004	AT1G50030.1	23524850
AT1G10840.1	Zm00001d037951_P001	AT1G50030.1	23524850

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G279200.1	Wheat	cytosol	85.13	94.81
Os04t0376500-01	Rice	nucleus	95.04	93.95
TraesCS2B01G296700.1	Wheat	golgi, unclear	92.71	92.71
TraesCS2D01G278200.1	Wheat	cytosol	92.42	92.42
Zm00001d025193_P003	Maize	cytosol, mitochondrion, plastid	97.38	89.54
OQU81340	Sorghum	cytosol	93.59	88.67
GSMUA_Achr6P27570_001	Banana	cytosol	85.71	87.24
HORVU2Hr1G068360.8	Barley	cytosol, plastid	92.71	86.65
VIT_05s0062g01080.t01	Wine grape	cytosol	81.92	83.38
GSMUA_Achr9P07190_001	Banana	cytosol	81.34	82.79
KRH01550	Soybean	cytosol	80.76	82.2
KRH70557	Soybean	endoplasmic reticulum	80.76	81.71
PGSC0003DMT400011661	Potato	cytosol	79.88	81.07
Solyc12g098680.1.1	Tomato	cytosol	79.3	80.47
PGSC0003DMT400055712	Potato	cytosol	78.43	79.59
Solyc09g098280.2.1	Tomato	nucleus	78.43	79.59
CDY20601	Canola	cytosol	72.3	77.74
CDY20600	Canola	cytosol	72.3	77.74
Bra031745.1-P	Field mustard	cytosol	76.09	77.45
CDX97915	Canola	cytosol	76.09	77.45
CDY19324	Canola	cytosol	75.8	77.15
Bra018420.1-P	Field mustard	cytosol	75.8	77.15
CDY20970	Canola	cytosol	75.8	77.15
CDY34854	Canola	cytosol	75.8	77.15
AT1G10840.1	Thale cress	cytosol	75.51	76.85
Bra019898.1-P	Field mustard	cytosol	75.51	76.85
CDY34673	Canola	cytosol	75.51	76.85

Protein Annotations

MapMan:17.4.1.3.8	Gene3D:3.40.140.10	ProteinID:AQK43169.1	GO:GO:0001731	GO:GO:0001732	GO:GO:0002183
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412
GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0033290	InterPro:IPR037518	InterPro:JAMM/MPN+_dom
UniProt:K7TNP5	HAMAP:MF_03007	InterPro:MPN	PFAM:PF01398	PFscan:PS50249	PANTHER:PTHR10410
PANTHER:PTHR10410:SF3	SMART:SM00232	UniParc:UPI000220A68F	EnsemblPlantsGene:Zm00001d025185	EnsemblPlants:Zm00001d025185_P001	EnsemblPlants:Zm00001d025185_T001
InterPro:eIF3h	SEG:seg	:	:	:	:

Description

Eukaryotic translation initiation factor 3 subunit H

Coordinates

chr10:+:108297253..108318568

Molecular Weight (calculated)

38860.4 Da

IEP (calculated)

4.529

GRAVY (calculated)

-0.354

Length

343 amino acids

Sequence
(BLAST)

001: MANSAAPGGM RSFLQAVSTV TEEAPTPLRV VQMEGLAVLK IIKHCEEFAP ALVTGQLLGL DVGSVLEVTN CFPFPIREED DEADADGANY QLEMMRCLRE
101: VNVDNNTIGW YQSCLLGSFQ TVELIETFMN YQESIRRCVC IVYDPSRSSQ GVLALKALKL TDSFMDLYRN NGLTGEKLRE KKLSWVDIFE EIPIKVSNSA
201: LVSAFMKELE PESPVTQCDL DRLKLSTAPF MERNLEFLIG CMDDLSSEQN KFQYYNRNLS RQQSQQQAWL QKRRQENMAR KAAGEEPLPE EDPSNPIFKP
301: IPEPSRLEGY LVTNQISSYC NHINGVAGQN FDRLYLMKAL HED

Best Arabidopsis Sequence Match ( AT1G10840.1 )
(BLAST)

001: MATMARSFLQ AISKDEAVAP PLRVVQIEGL AVLKIIKHCK EFSPTLVTGQ LLGLDVGSVL EVTNCFPFPV RDDDEEIEAD GANYQLEMMR CLREVNVDNN
101: TVGWYQSTVL GSYQTVELIE TFMNYQENIK RCVCIIYDPS KADLGVLALK ALKLSDSFME LYRGGNFTGE KLREKNFSWM DIFEEIPIKV SNSALVSAFM
201: TELETDTPVS QGDYDRLHSS TTPFLENNME FLIKCMDDLS MEQQKFQYYY RNLSRQQAQQ QAWLQKRRTE NMARKSAGEE PLPEEDPSNP IFKAIPEPSR
301: LESFLITNQV SNFCGQINGV AGQNFSRLYL TKALHDN

Arabidopsis Description

TIF3H1Eukaryotic translation initiation factor 3 subunit H [Source:UniProtKB/Swiss-Prot;Acc:Q9C5Z2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.