Factsheet for Solyc09g098280.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g106840.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10840.1	Solyc01g106840.1.1	AT1G50030.1	23524850

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055712	Potato	cytosol	100.0	100.0
Solyc12g098680.1.1	Tomato	cytosol	94.08	94.08
VIT_05s0062g01080.t01	Wine grape	cytosol	90.83	91.1
KRH01550	Soybean	cytosol	89.05	89.32
KRH70557	Soybean	endoplasmic reticulum	88.76	88.5
GSMUA_Achr6P27570_001	Banana	cytosol	84.62	84.87
Bra031745.1-P	Field mustard	cytosol	83.43	83.68
AT1G10840.1	Thale cress	cytosol	83.43	83.68
CDX97915	Canola	cytosol	83.14	83.38
CDY34854	Canola	cytosol	83.14	83.38
Bra018420.1-P	Field mustard	cytosol	82.84	83.09
CDY34673	Canola	cytosol	82.84	83.09
CDY20970	Canola	cytosol	82.84	83.09
Bra019898.1-P	Field mustard	cytosol	82.84	83.09
CDY20601	Canola	cytosol	78.4	83.07
CDY20600	Canola	cytosol	78.4	83.07
CDY19324	Canola	cytosol	82.54	82.79
TraesCS2A01G279200.1	Wheat	cytosol	73.67	80.84
GSMUA_Achr9P07190_001	Banana	cytosol	79.88	80.12
Zm00001d025185_P001	Maize	extracellular, mitochondrion	79.59	78.43
Os04t0376500-01	Rice	nucleus	80.18	78.1
TraesCS2B01G296700.1	Wheat	golgi, unclear	78.99	77.84
TraesCS2D01G278200.1	Wheat	cytosol	78.7	77.55
HORVU2Hr1G068360.8	Barley	cytosol, plastid	79.29	73.02
Zm00001d025193_P003	Maize	cytosol, mitochondrion, plastid	78.99	71.58
OQU81340	Sorghum	cytosol	75.15	70.17

Protein Annotations

MapMan:17.4.1.3.8	Gene3D:3.40.140.10	GO:GO:0001731	GO:GO:0001732	GO:GO:0002183	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016282	GO:GO:0019538	GO:GO:0033290	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	UniProt:K4CWZ8
MEROPS:M67.971	HAMAP:MF_03007	InterPro:MPN	PFAM:PF01398	PFscan:PS50249	PANTHER:PTHR10410
PANTHER:PTHR10410:SF3	SMART:SM00232	EnsemblPlantsGene:Solyc09g098280.2	EnsemblPlants:Solyc09g098280.2.1	UniParc:UPI000276C16D	InterPro:eIF3h
SEG:seg	:	:	:	:	:

Description

Eukaryotic translation initiation factor 3 subunit H [Source:UniProtKB/TrEMBL;Acc:K4CWZ8]

Coordinates

chr9:+:72152748..72158506

Molecular Weight (calculated)

38718.2 Da

IEP (calculated)

4.475

GRAVY (calculated)

-0.343

Length

338 amino acids

Sequence
(BLAST)

001: MANPTGRSFL QVAATEEAVA PPLRVVQIEG LVILKIIKHC QEFSPALVTG QLLGLDVGSV LEVTNCFPFP VREEDEEIEA EGANYQLEMM RCLREVNVDN
101: NTVGWYQSTL FGSYQTVELI ETFMNYQENI KRCVCIIYDP SRSNQGVLAL KALKLSDSFM ELYKSNNFTG EKLREKNLSW VDIFEEIPIK VSNSALISAF
201: MTELEPDTPV TQCDYERLQL STNPYLERNV EFLIECMDDL SMEQQKFQFY YRNLSRQQAQ QQAWLQKRRT ENMARKAAGE ELLPEEDPSN PVFKPLPEPS
301: RLDSFLITNQ ISNYCNQING VAGQSLSRLH LMKALHEN

Best Arabidopsis Sequence Match ( AT1G10840.1 )
(BLAST)

001: MATMARSFLQ AISKDEAVAP PLRVVQIEGL AVLKIIKHCK EFSPTLVTGQ LLGLDVGSVL EVTNCFPFPV RDDDEEIEAD GANYQLEMMR CLREVNVDNN
101: TVGWYQSTVL GSYQTVELIE TFMNYQENIK RCVCIIYDPS KADLGVLALK ALKLSDSFME LYRGGNFTGE KLREKNFSWM DIFEEIPIKV SNSALVSAFM
201: TELETDTPVS QGDYDRLHSS TTPFLENNME FLIKCMDDLS MEQQKFQYYY RNLSRQQAQQ QAWLQKRRTE NMARKSAGEE PLPEEDPSNP IFKAIPEPSR
301: LESFLITNQV SNFCGQINGV AGQNFSRLYL TKALHDN

Arabidopsis Description

TIF3H1Eukaryotic translation initiation factor 3 subunit H [Source:UniProtKB/Swiss-Prot;Acc:Q9C5Z2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.