Factsheet for PGSC0003DMT400055712

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400010706
PGSC0003DMT400066098

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10840.1	PGSC0003DMT400010706	AT1G50030.1	23524850
AT1G10840.1	PGSC0003DMT400066098	AT1G50030.1	23524850

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g098280.2.1	Tomato	nucleus	100.0	100.0
PGSC0003DMT400011661	Potato	cytosol	94.67	94.67
VIT_05s0062g01080.t01	Wine grape	cytosol	90.83	91.1
KRH01550	Soybean	cytosol	89.05	89.32
KRH70557	Soybean	endoplasmic reticulum	88.76	88.5
GSMUA_Achr6P27570_001	Banana	cytosol	84.62	84.87
Bra031745.1-P	Field mustard	cytosol	83.43	83.68
AT1G10840.1	Thale cress	cytosol	83.43	83.68
CDX97915	Canola	cytosol	83.14	83.38
CDY34854	Canola	cytosol	83.14	83.38
Bra018420.1-P	Field mustard	cytosol	82.84	83.09
CDY34673	Canola	cytosol	82.84	83.09
CDY20970	Canola	cytosol	82.84	83.09
Bra019898.1-P	Field mustard	cytosol	82.84	83.09
CDY20601	Canola	cytosol	78.4	83.07
CDY20600	Canola	cytosol	78.4	83.07
CDY19324	Canola	cytosol	82.54	82.79
TraesCS2A01G279200.1	Wheat	cytosol	73.67	80.84
GSMUA_Achr9P07190_001	Banana	cytosol	79.88	80.12
Zm00001d025185_P001	Maize	extracellular, mitochondrion	79.59	78.43
Os04t0376500-01	Rice	nucleus	80.18	78.1
TraesCS2B01G296700.1	Wheat	golgi, unclear	78.99	77.84
TraesCS2D01G278200.1	Wheat	cytosol	78.7	77.55
HORVU2Hr1G068360.8	Barley	cytosol, plastid	79.29	73.02
Zm00001d025193_P003	Maize	cytosol, mitochondrion, plastid	78.99	71.58
OQU81340	Sorghum	cytosol	75.15	70.17

Protein Annotations

EntrezGene:102604600	MapMan:17.4.1.3.8	Gene3D:3.40.140.10	GO:GO:0001731	GO:GO:0001732	GO:GO:0002183
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412
GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0033290	InterPro:IPR037518	InterPro:JAMM/MPN+_dom
UniProt:M1BYD6	MEROPS:M67.971	HAMAP:MF_03007	InterPro:MPN	PFAM:PF01398	EnsemblPlantsGene:PGSC0003DMG400021629
PGSC:PGSC0003DMG400021629	EnsemblPlants:PGSC0003DMT400055712	PFscan:PS50249	PANTHER:PTHR10410	PANTHER:PTHR10410:SF3	SMART:SM00232
UniParc:UPI000276C16D	RefSeq:XP_006364692.1	InterPro:eIF3h	SEG:seg	:	:

Description

Mov34-1 [Source:PGSC_GENE;Acc:PGSC0003DMG400021629]

Coordinates

chr9:+:61127398..61133027

Molecular Weight (calculated)

38718.2 Da

IEP (calculated)

4.475

GRAVY (calculated)

-0.343

Length

338 amino acids

Sequence
(BLAST)

001: MANPTGRSFL QVAATEEAVA PPLRVVQIEG LVILKIIKHC QEFSPALVTG QLLGLDVGSV LEVTNCFPFP VREEDEEIEA EGANYQLEMM RCLREVNVDN
101: NTVGWYQSTL FGSYQTVELI ETFMNYQENI KRCVCIIYDP SRSNQGVLAL KALKLSDSFM ELYKSNNFTG EKLREKNLSW VDIFEEIPIK VSNSALISAF
201: MTELEPDTPV TQCDYERLQL STNPYLERNV EFLIECMDDL SMEQQKFQFY YRNLSRQQAQ QQAWLQKRRT ENMARKAAGE ELLPEEDPSN PVFKPLPEPS
301: RLDSFLITNQ ISNYCNQING VAGQSLSRLH LMKALHEN

Best Arabidopsis Sequence Match ( AT1G10840.1 )
(BLAST)

001: MATMARSFLQ AISKDEAVAP PLRVVQIEGL AVLKIIKHCK EFSPTLVTGQ LLGLDVGSVL EVTNCFPFPV RDDDEEIEAD GANYQLEMMR CLREVNVDNN
101: TVGWYQSTVL GSYQTVELIE TFMNYQENIK RCVCIIYDPS KADLGVLALK ALKLSDSFME LYRGGNFTGE KLREKNFSWM DIFEEIPIKV SNSALVSAFM
201: TELETDTPVS QGDYDRLHSS TTPFLENNME FLIKCMDDLS MEQQKFQYYY RNLSRQQAQQ QAWLQKRRTE NMARKSAGEE PLPEEDPSNP IFKAIPEPSR
301: LESFLITNQV SNFCGQINGV AGQNFSRLYL TKALHDN

Arabidopsis Description

TIF3H1Eukaryotic translation initiation factor 3 subunit H [Source:UniProtKB/Swiss-Prot;Acc:Q9C5Z2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.