Factsheet for GSMUA_Achr6P27570_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P01370_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10840.1	GSMUA_Achr4P01370_001	AT1G50030.1	23524850

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P07190_001	Banana	cytosol	89.61	89.61
TraesCS2A01G279200.1	Wheat	cytosol	80.71	88.31
VIT_05s0062g01080.t01	Wine grape	cytosol	87.24	87.24
PGSC0003DMT400011661	Potato	cytosol	86.35	86.09
Zm00001d025185_P001	Maize	extracellular, mitochondrion	87.24	85.71
Os04t0376500-01	Rice	nucleus	88.13	85.59
Solyc12g098680.1.1	Tomato	cytosol	85.76	85.5
KRH01550	Soybean	cytosol	84.87	84.87
Solyc09g098280.2.1	Tomato	nucleus	84.87	84.62
PGSC0003DMT400055712	Potato	cytosol	84.87	84.62
TraesCS2B01G296700.1	Wheat	golgi, unclear	86.05	84.55
KRH70557	Soybean	endoplasmic reticulum	84.87	84.37
TraesCS2D01G278200.1	Wheat	cytosol	85.76	84.26
CDY20601	Canola	cytosol	77.15	81.5
CDY20600	Canola	cytosol	77.15	81.5
CDY20970	Canola	cytosol	81.01	81.01
CDY19324	Canola	cytosol	81.01	81.01
CDX97915	Canola	cytosol	81.01	81.01
Bra031745.1-P	Field mustard	cytosol	81.01	81.01
AT1G10840.1	Thale cress	cytosol	81.01	81.01
Bra018420.1-P	Field mustard	cytosol	80.71	80.71
CDY34854	Canola	cytosol	80.71	80.71
Bra019898.1-P	Field mustard	cytosol	80.71	80.71
CDY34673	Canola	cytosol	80.42	80.42
HORVU2Hr1G068360.8	Barley	cytosol, plastid	86.35	79.29
Zm00001d025193_P003	Maize	cytosol, mitochondrion, plastid	86.94	78.55
OQU81340	Sorghum	cytosol	82.79	77.07

Protein Annotations

MapMan:17.4.1.3.8	Gene3D:3.40.140.10	GO:GO:0001731	GO:GO:0001732	GO:GO:0002183	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016282	GO:GO:0019538	GO:GO:0033290	EnsemblPlantsGene:GSMUA_Achr6G27570_001	EnsemblPlants:GSMUA_Achr6P27570_001	EnsemblPlants:GSMUA_Achr6T27570_001
InterPro:IPR037518	InterPro:JAMM/MPN+_dom	UniProt:M0TAQ2	HAMAP:MF_03007	InterPro:MPN	PFAM:PF01398
PFscan:PS50249	PANTHER:PTHR10410	PANTHER:PTHR10410:SF3	SMART:SM00232	UniParc:UPI000295A23A	InterPro:eIF3h
SEG:seg	:	:	:	:	:

Description

Eukaryotic translation initiation factor 3 subunit H [Source:GMGC_GENE;Acc:GSMUA_Achr6G27570_001]

Coordinates

chr6:-:28045199..28051804

Molecular Weight (calculated)

38627.0 Da

IEP (calculated)

4.467

GRAVY (calculated)

-0.401

Length

337 amino acids

Sequence
(BLAST)

001: MANPMVRSFL QAVSSEEVTP PLRVVQMEGL AVLKIIKHCN EFSPALVTGQ LLGLDVGSVL EVTNCFPFPT REEDEEVEAD GANYQLEMMR CLREVNVDNN
101: TVGWYQSTLL GSFQTVELIE TFMNYQENIR RCVCIIYDPS RSSQGALALK ALKLTDSFMD LYRNNNFTGE KLREKKLSWV DIFEEIPIKV SNSALASAFM
201: TELEPESPVA QCDYDRLKLS TAPYVERNLE FLIDCMEDLS AEQNKFQYYY RNLSRQQAQQ QAWLQKRRVE NMARKAAGEE PLPEEDPSNP IFKPIPEPSR
301: LDSYLITNQI SNYCNQINGV AGQNFNRLYM MKALQEN

Best Arabidopsis Sequence Match ( AT1G10840.1 )
(BLAST)

001: MATMARSFLQ AISKDEAVAP PLRVVQIEGL AVLKIIKHCK EFSPTLVTGQ LLGLDVGSVL EVTNCFPFPV RDDDEEIEAD GANYQLEMMR CLREVNVDNN
101: TVGWYQSTVL GSYQTVELIE TFMNYQENIK RCVCIIYDPS KADLGVLALK ALKLSDSFME LYRGGNFTGE KLREKNFSWM DIFEEIPIKV SNSALVSAFM
201: TELETDTPVS QGDYDRLHSS TTPFLENNME FLIKCMDDLS MEQQKFQYYY RNLSRQQAQQ QAWLQKRRTE NMARKSAGEE PLPEEDPSNP IFKAIPEPSR
301: LESFLITNQV SNFCGQINGV AGQNFSRLYL TKALHDN

Arabidopsis Description

TIF3H1Eukaryotic translation initiation factor 3 subunit H [Source:UniProtKB/Swiss-Prot;Acc:Q9C5Z2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.