CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY28135
CDY29333
CDY46271
CDY50976
CDY71256

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10840.1	CDY28135	AT1G50030.1	23524850
AT1G10840.1	CDY29333	AT1G50030.1	23524850
AT1G10840.1	CDY46271	AT1G50030.1	23524850
AT1G10840.1	CDY50976	AT1G50030.1	23524850
AT1G10840.1	CDY71256	AT1G50030.1	23524850

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019898.1-P	Field mustard	cytosol	99.41	99.41
CDY19324	Canola	cytosol	99.41	99.41
CDY34854	Canola	cytosol	99.11	99.11
CDY34673	Canola	cytosol	98.81	98.81
CDY20600	Canola	cytosol	93.47	98.75
CDY20601	Canola	cytosol	93.47	98.75
AT1G10840.1	Thale cress	cytosol	98.52	98.52
CDY20970	Canola	cytosol	97.92	97.92
VIT_05s0062g01080.t01	Wine grape	cytosol	83.98	83.98
Solyc09g098280.2.1	Tomato	nucleus	83.38	83.14
PGSC0003DMT400055712	Potato	cytosol	83.38	83.14
PGSC0003DMT400011661	Potato	cytosol	83.38	83.14
KRH01550	Soybean	cytosol	83.09	83.09
Solyc12g098680.1.1	Tomato	cytosol	82.79	82.54
KRH70557	Soybean	endoplasmic reticulum	82.79	82.3
GSMUA_Achr6P27570_001	Banana	cytosol	81.01	81.01
TraesCS2A01G279200.1	Wheat	cytosol	72.7	79.55
GSMUA_Achr9P07190_001	Banana	cytosol	77.15	77.15
Os04t0376500-01	Rice	nucleus	79.23	76.95
Zm00001d025185_P001	Maize	extracellular, mitochondrion	77.45	76.09
TraesCS2B01G296700.1	Wheat	golgi, unclear	77.15	75.8
TraesCS2D01G278200.1	Wheat	cytosol	77.15	75.8
HORVU2Hr1G068360.8	Barley	cytosol, plastid	77.45	71.12
Zm00001d025193_P003	Maize	cytosol, mitochondrion, plastid	77.45	69.97
OQU81340	Sorghum	cytosol	73.0	67.96

Protein Annotations

MapMan:17.4.1.3.8	Gene3D:3.40.140.10	GO:A0A078E727	EnsemblPlants:CDX97915	ProteinID:CDX97915	ProteinID:CDX97915.1
GO:GO:0001731	GO:GO:0001732	GO:GO:0002183	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016282	GO:GO:0019538
GO:GO:0033290	EnsemblPlantsGene:GSBRNA2T00105258001	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	HAMAP:MF_03007	InterPro:MPN
PFAM:PF01398	PFscan:PS50249	PANTHER:PTHR10410	PANTHER:PTHR10410:SF3	SMART:SM00232	UniParc:UPI0004EDEA85
InterPro:eIF3h	SEG:seg	:	:	:	:

Description

BnaA06g06660D

Coordinates

chrLK031902:-:26191..28538

Molecular Weight (calculated)

38396.8 Da

IEP (calculated)

4.552

GRAVY (calculated)

-0.332

Length

337 amino acids

Sequence
(BLAST)

001: MATMARSFLQ AISKDEAVAP PLRVVQIEGL AVLKIIKHCK EFAPTLVTGQ LLGLDVGSVL EVTNCFPFPV RDDDEEIEAD GANYQLEMMR CLREVNVDNN
101: TVGWYQSTVL GSYQTVELIE TFMNYQENIK RCVCIIYDPS KADLGVLALK ALKLSDSFME LYRGGNFTGE KLREKNFSWM DIFEEIPIKV SNSALVSAFM
201: TELETDAPVS QGDYDRLHSS TTPFLENNME FLIKCMDDLS MEQQKFQYYY RNLSRQQAQQ QAWLQKRRTE NMARRSAGEE PLPEEDPSNP IFKPIPEPSR
301: LESFLITNQV SNFCGQINGV AGQNFSRLYL TKALHEN

Best Arabidopsis Sequence Match ( AT1G10840.1 )
(BLAST)

001: MATMARSFLQ AISKDEAVAP PLRVVQIEGL AVLKIIKHCK EFSPTLVTGQ LLGLDVGSVL EVTNCFPFPV RDDDEEIEAD GANYQLEMMR CLREVNVDNN
101: TVGWYQSTVL GSYQTVELIE TFMNYQENIK RCVCIIYDPS KADLGVLALK ALKLSDSFME LYRGGNFTGE KLREKNFSWM DIFEEIPIKV SNSALVSAFM
201: TELETDTPVS QGDYDRLHSS TTPFLENNME FLIKCMDDLS MEQQKFQYYY RNLSRQQAQQ QAWLQKRRTE NMARKSAGEE PLPEEDPSNP IFKAIPEPSR
301: LESFLITNQV SNFCGQINGV AGQNFSRLYL TKALHDN

Arabidopsis Description

TIF3H1Eukaryotic translation initiation factor 3 subunit H [Source:UniProtKB/Swiss-Prot;Acc:Q9C5Z2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.