Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G227600.1 | |
| TraesCS1B01G241900.3 | |
| TraesCS1D01G229300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G10840.1 | TraesCS1A01G227600.1 | AT1G50030.1 | 23524850 |
| AT1G10840.1 | TraesCS1B01G241900.3 | AT1G50030.1 | 23524850 |
| AT1G10840.1 | TraesCS1D01G229300.1 | AT1G50030.1 | 23524850 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G279200.1 | Wheat | cytosol | 89.21 | 99.35 |
| TraesCS2B01G296700.1 | Wheat | golgi, unclear | 98.54 | 98.54 |
| Os04t0376500-01 | Rice | nucleus | 94.17 | 93.08 |
| Zm00001d025185_P001 | Maize | extracellular, mitochondrion | 92.42 | 92.42 |
| HORVU2Hr1G068360.8 | Barley | cytosol, plastid | 98.54 | 92.1 |
| GSMUA_Achr6P27570_001 | Banana | cytosol | 84.26 | 85.76 |
| OQU81340 | Sorghum | cytosol | 88.34 | 83.7 |
| Zm00001d025193_P003 | Maize | cytosol, mitochondrion, plastid | 90.96 | 83.65 |
| VIT_05s0062g01080.t01 | Wine grape | cytosol | 80.47 | 81.9 |
| KRH01550 | Soybean | cytosol | 80.47 | 81.9 |
| KRH70557 | Soybean | endoplasmic reticulum | 80.47 | 81.42 |
| GSMUA_Achr9P07190_001 | Banana | cytosol | 79.3 | 80.71 |
| PGSC0003DMT400011661 | Potato | cytosol | 78.72 | 79.88 |
| Solyc12g098680.1.1 | Tomato | cytosol | 78.13 | 79.29 |
| PGSC0003DMT400055712 | Potato | cytosol | 77.55 | 78.7 |
| Solyc09g098280.2.1 | Tomato | nucleus | 77.55 | 78.7 |
| CDX97915 | Canola | cytosol | 75.8 | 77.15 |
| Bra031745.1-P | Field mustard | cytosol | 75.8 | 77.15 |
| CDY20601 | Canola | cytosol | 71.72 | 77.12 |
| CDY20600 | Canola | cytosol | 71.72 | 77.12 |
| CDY34854 | Canola | cytosol | 75.51 | 76.85 |
| CDY19324 | Canola | cytosol | 75.51 | 76.85 |
| AT1G10840.1 | Thale cress | cytosol | 75.22 | 76.56 |
| Bra019898.1-P | Field mustard | cytosol | 75.22 | 76.56 |
| CDY34673 | Canola | cytosol | 75.22 | 76.56 |
| Bra018420.1-P | Field mustard | cytosol | 74.93 | 76.26 |
| CDY20970 | Canola | cytosol | 74.93 | 76.26 |
Protein Annotations
| MapMan:17.4.1.3.8 | Gene3D:3.40.140.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0005840 | GO:GO:0005852 | GO:GO:0006412 | GO:GO:0008135 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009733 | GO:GO:0009737 | GO:GO:0009744 |
| GO:GO:0009749 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0034286 | GO:GO:0042788 | GO:GO:0045948 |
| InterPro:IPR037518 | InterPro:JAMM/MPN+_dom | HAMAP:MF_03007 | InterPro:MPN | PFAM:PF01398 | PFscan:PS50249 |
| PANTHER:PTHR10410 | PANTHER:PTHR10410:SF3 | SMART:SM00232 | EnsemblPlantsGene:TraesCS2D01G278200 | EnsemblPlants:TraesCS2D01G278200.1 | TIGR:cd08065 |
| InterPro:eIF3h | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2D:-:349002689..349008405
Molecular Weight (calculated)
38837.5 Da
IEP (calculated)
4.658
GRAVY (calculated)
-0.355
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: MANPAPATGG KSFLQAMSTV TEEAAVQLRV VQMEGLAVLK IIKHCEEFAP ALVTGQLLGL DVGSVLKVTN CFPFPIREDD EEADADGANY QLEMMRCLRE
101: VNVDNNTVGW YQSCLLGSFQ TVELIETFMN YQENIRRCVC IVYDPSRSSQ GVLALKALKL TDSFMDLYRN NGLTGEKLRE KKLSWVDIFE EIPIKVSNSA
201: LVSAFMKELE PESPVSQCDF DRLKLSTAPF MERNLEFMIG CMDGLSSEQN KFQYYYRNLG RQQSQQQAWL QKRRQENMSR KAAGEEPLPE EDPSNPIFKP
301: LPEPSRLEGY LVTNQISSYC NHINGVAGQS FNRLYLMKAL QED
101: VNVDNNTVGW YQSCLLGSFQ TVELIETFMN YQENIRRCVC IVYDPSRSSQ GVLALKALKL TDSFMDLYRN NGLTGEKLRE KKLSWVDIFE EIPIKVSNSA
201: LVSAFMKELE PESPVSQCDF DRLKLSTAPF MERNLEFMIG CMDGLSSEQN KFQYYYRNLG RQQSQQQAWL QKRRQENMSR KAAGEEPLPE EDPSNPIFKP
301: LPEPSRLEGY LVTNQISSYC NHINGVAGQS FNRLYLMKAL QED
001: MATMARSFLQ AISKDEAVAP PLRVVQIEGL AVLKIIKHCK EFSPTLVTGQ LLGLDVGSVL EVTNCFPFPV RDDDEEIEAD GANYQLEMMR CLREVNVDNN
101: TVGWYQSTVL GSYQTVELIE TFMNYQENIK RCVCIIYDPS KADLGVLALK ALKLSDSFME LYRGGNFTGE KLREKNFSWM DIFEEIPIKV SNSALVSAFM
201: TELETDTPVS QGDYDRLHSS TTPFLENNME FLIKCMDDLS MEQQKFQYYY RNLSRQQAQQ QAWLQKRRTE NMARKSAGEE PLPEEDPSNP IFKAIPEPSR
301: LESFLITNQV SNFCGQINGV AGQNFSRLYL TKALHDN
101: TVGWYQSTVL GSYQTVELIE TFMNYQENIK RCVCIIYDPS KADLGVLALK ALKLSDSFME LYRGGNFTGE KLREKNFSWM DIFEEIPIKV SNSALVSAFM
201: TELETDTPVS QGDYDRLHSS TTPFLENNME FLIKCMDDLS MEQQKFQYYY RNLSRQQAQQ QAWLQKRRTE NMARKSAGEE PLPEEDPSNP IFKAIPEPSR
301: LESFLITNQV SNFCGQINGV AGQNFSRLYL TKALHDN
Arabidopsis Description
TIF3H1Eukaryotic translation initiation factor 3 subunit H [Source:UniProtKB/Swiss-Prot;Acc:Q9C5Z2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.