CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plasma membrane 1
plastid 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH27589
KRH77911

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10840.1	KRH27589	AT1G50030.1	23524850
AT1G10840.1	KRH77911	AT1G50030.1	23524850

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01550	Soybean	cytosol	99.11	99.7
VIT_05s0062g01080.t01	Wine grape	cytosol	91.74	92.28
PGSC0003DMT400011661	Potato	cytosol	89.68	89.94
Solyc12g098680.1.1	Tomato	cytosol	89.38	89.64
Solyc09g098280.2.1	Tomato	nucleus	88.5	88.76
PGSC0003DMT400055712	Potato	cytosol	88.5	88.76
GSMUA_Achr6P27570_001	Banana	cytosol	84.37	84.87
TraesCS2A01G279200.1	Wheat	cytosol	75.81	83.44
Bra031745.1-P	Field mustard	cytosol	82.6	83.09
AT1G10840.1	Thale cress	cytosol	82.6	83.09
CDX97915	Canola	cytosol	82.3	82.79
CDY34854	Canola	cytosol	82.3	82.79
Bra018420.1-P	Field mustard	cytosol	82.01	82.49
CDY34673	Canola	cytosol	82.01	82.49
CDY20970	Canola	cytosol	82.01	82.49
Bra019898.1-P	Field mustard	cytosol	82.01	82.49
CDY20601	Canola	cytosol	77.58	82.45
CDY20600	Canola	cytosol	77.58	82.45
CDY19324	Canola	cytosol	81.71	82.2
GSMUA_Achr9P07190_001	Banana	cytosol	81.42	81.9
Os04t0376500-01	Rice	nucleus	82.89	80.98
Zm00001d025185_P001	Maize	extracellular, mitochondrion	81.71	80.76
TraesCS2B01G296700.1	Wheat	golgi, unclear	81.42	80.47
TraesCS2D01G278200.1	Wheat	cytosol	81.42	80.47
HORVU2Hr1G068360.8	Barley	cytosol, plastid	81.71	75.48
Zm00001d025193_P003	Maize	cytosol, mitochondrion, plastid	81.42	73.99
OQU81340	Sorghum	cytosol	77.29	72.38

Protein Annotations

EntrezGene:100795273	MapMan:17.4.1.3.8	Gene3D:3.40.140.10	EMBL:ACUP02000782	EMBL:BT099133	UniProt:C6TN20
EnsemblPlantsGene:GLYMA_02G097300	GO:GO:0001731	GO:GO:0001732	GO:GO:0002183	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016282
GO:GO:0019538	GO:GO:0033290	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	EnsemblPlants:KRH70557	ProteinID:KRH70557
ProteinID:KRH70557.1	MEROPS:M67.971	HAMAP:MF_03007	InterPro:MPN	PFAM:PF01398	PFscan:PS50249
PANTHER:PTHR10410	PANTHER:PTHR10410:SF3	SMART:SM00232	UniParc:UPI0001B1731B	InterPro:eIF3h	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:8740317..8744368

Molecular Weight (calculated)

38799.2 Da

IEP (calculated)

4.441

GRAVY (calculated)

-0.368

Length

339 amino acids

Sequence
(BLAST)

001: MATTTTPARS FLQVAATEEA APPLRVVQIE GLVILKIIKH CKDHSPSLVT GQLLGLDVGS VLEVTNCFPF PMREEDEEIE ADGANYQLEM MRCLREVNVD
101: NNTVGWYQST LLGSFQTVEL IETFMNYQEN IRRCVCIIYD PSRSDQGVLA LKALKLSDSF MELYRSNNFT GEKLREKNLS WVDIFEEIPI KVSNSALISA
201: FMTELEPDTP VTQCDYDRLQ LSTSSLMERN TEFLIECMDD LSLEQQKFQF YYRSLSRQQA QQQAWLQKRR AENMARKAAG EEPLPEEDPS NPIFKPLPEP
301: SRLESFLITN QISNYCNQIN GVSGQSFNRL YLMKALHED

Best Arabidopsis Sequence Match ( AT1G10840.1 )
(BLAST)

001: MATMARSFLQ AISKDEAVAP PLRVVQIEGL AVLKIIKHCK EFSPTLVTGQ LLGLDVGSVL EVTNCFPFPV RDDDEEIEAD GANYQLEMMR CLREVNVDNN
101: TVGWYQSTVL GSYQTVELIE TFMNYQENIK RCVCIIYDPS KADLGVLALK ALKLSDSFME LYRGGNFTGE KLREKNFSWM DIFEEIPIKV SNSALVSAFM
201: TELETDTPVS QGDYDRLHSS TTPFLENNME FLIKCMDDLS MEQQKFQYYY RNLSRQQAQQ QAWLQKRRTE NMARKSAGEE PLPEEDPSNP IFKAIPEPSR
301: LESFLITNQV SNFCGQINGV AGQNFSRLYL TKALHDN

Arabidopsis Description

TIF3H1Eukaryotic translation initiation factor 3 subunit H [Source:UniProtKB/Swiss-Prot;Acc:Q9C5Z2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.