Factsheet for AT5G03415.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80867	Canola	nucleus	58.7	70.62
KRH27723	Soybean	nucleus	61.56	70.33
KRH77687	Soybean	nucleus	61.04	69.53
CDY44365	Canola	nucleus	59.48	66.38
PGSC0003DMT400021592	Potato	nucleus	61.3	66.29
Solyc10g078430.1.1	Tomato	nucleus	60.78	66.1
CDY11252	Canola	nucleus	59.48	63.43
Bra005763.1-P	Field mustard	nucleus	59.74	63.01
VIT_08s0040g01330.t01	Wine grape	nucleus	48.31	52.25
VIT_08s0040g01300.t01	Wine grape	nucleus	14.81	49.57
GSMUA_Achr5P12500_001	Banana	mitochondrion, nucleus	19.74	49.35
AT5G02470.3	Thale cress	nucleus	29.35	38.7

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.140.80	MapMan:13.1.2.3	MapMan:15.5.10	EntrezGene:831847	EMBL:AB493733
ProteinID:AED90599.1	ProteinID:AED90600.1	EMBL:AJ294532	EMBL:AK228148	ArrayExpress:AT5G03415	EnsemblPlantsGene:AT5G03415
RefSeq:AT5G03415	TAIR:AT5G03415	RefSeq:AT5G03415-TAIR-G	EnsemblPlants:AT5G03415.1	TAIR:AT5G03415.1	EMBL:AY086018
Unigene:At.4864	ProteinID:CAB83299.1	ncoils:Coil	Symbol:DPB	InterPro:E2F-DP_heterodim	InterPro:E2F_WHTH_DNA-bd_dom
GO:GO:0000082	GO:GO:0000981	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005667	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006351	GO:GO:0006355
GO:GO:0006357	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0042023	GO:GO:0046982	InterPro:IPR036388	InterPro:IPR038168	RefSeq:NP_001190214.1	RefSeq:NP_850757.1
PFAM:PF02319	PFAM:PF08781	PIRSF:PIRSF009404	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084
PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PANTHER:PTHR12548	PANTHER:PTHR12548:SF15	UniProt:Q9FNY2
SMART:SM01138	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785	InterPro:TF_DP_C_sf	InterPro:Transc_factor_DP_C
InterPro:Transcrpt_fac_DP	UniParc:UPI000004B2E4	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

DPBTranscription factor-like protein DPB [Source:UniProtKB/Swiss-Prot;Acc:Q9FNY2]

Coordinates

chr5:+:842488..845454

Molecular Weight (calculated)

42757.6 Da

IEP (calculated)

6.442

GRAVY (calculated)

-0.909

Length

385 amino acids

Sequence
(BLAST)

001: MTTTGSNSNH NHHESNNNNN NPSTRSWGTA VSGQSVSTSG SMGSPSSRSE QTITVVTSTS DTTFQRLNNL DIQGDDAGSQ GASGVKKKKR GQRAAGPDKT
101: GRGLRQFSMK VCEKVESKGR TTYNEVADEL VAEFALPNND GTSPDQQQYD EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW RGLPRTSLSD IEELKNERLS
201: LRNRIEKKTA YSQELEEQYV GLQNLIQRNE HLYSSGNAPS GGVALPFILV QTRPHATVEV EISEDMQLVH FDFNSTPFEL HDDNFVLKTM KFCDQPPQQP
301: NGRNNSQLVC HNFTPENPNK GPSTGPTPQL DMYETHLQSQ QHQQHSQLQI IPMPETNNVT SSADTAPVKS PSLPGIMNSS MKPEN

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.