Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 4
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDX69768 | cytosol, nucleus |
| CDX73827 | |
| CDX74179 | |
| CDX76485 | |
| CDX78930 | |
| CDX79500 | |
| CDX96319 | |
| CDX97090 | cytosol, nucleus |
| CDX97503 | |
| CDX97915 | |
| CDX98609 | |
| CDX99388 | |
| CDY00765 | |
| CDY01588 | |
| CDY03686 | |
| CDY03687 | |
| CDY04295 | |
| CDY05197 | |
| CDY08440 | |
| CDY09282 | |
| CDY09484 | |
| CDY16998 | |
| CDY17797 | |
| CDY19324 | |
| CDY20600 | |
| CDY20601 | |
| CDY20970 | |
| CDY21118 | |
| CDY23627 | |
| CDY28657 | |
| CDY30010 | |
| CDY33397 | |
| CDY34315 | |
| CDY34673 | |
| CDY34854 | |
| CDY37936 | |
| CDY37939 | |
| CDY40664 | |
| CDY41887 | |
| CDY42141 | |
| CDY50559 | |
| CDY50744 | |
| CDY52391 | |
| CDY52614 | |
| CDY53532 | |
| CDY66787 | |
| CDY68615 | |
| CDY70356 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11252 | Canola | nucleus | 89.38 | 79.22 |
| CDY44365 | Canola | nucleus | 67.5 | 62.61 |
| KRH27723 | Soybean | nucleus | 63.75 | 60.53 |
| KRH77687 | Soybean | nucleus | 63.44 | 60.06 |
| AT5G03415.1 | Thale cress | nucleus | 70.62 | 58.7 |
| Solyc10g078430.1.1 | Tomato | nucleus | 61.25 | 55.37 |
| PGSC0003DMT400021592 | Potato | nucleus | 61.56 | 55.34 |
| GSMUA_Achr5P12500_001 | Banana | mitochondrion, nucleus | 22.19 | 46.1 |
| VIT_08s0040g01300.t01 | Wine grape | nucleus | 16.56 | 46.09 |
| VIT_08s0040g01330.t01 | Wine grape | nucleus | 48.12 | 43.26 |
| CDY40359 | Canola | nucleus | 34.38 | 38.06 |
| CDX80823 | Canola | nucleus | 33.75 | 37.89 |
| CDY10450 | Canola | nucleus | 34.06 | 37.33 |
| CDY55548 | Canola | nucleus | 33.12 | 37.06 |
| CDY72556 | Canola | cytosol | 14.69 | 35.34 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:1.20.140.80 | MapMan:13.1.2.3 | MapMan:15.5.10 | GO:A0A078CVU9 | EnsemblPlants:CDX80867 |
| ProteinID:CDX80867 | ProteinID:CDX80867.1 | ncoils:Coil | InterPro:E2F-DP_heterodim | InterPro:E2F_WHTH_DNA-bd_dom | GO:GO:0003674 |
| GO:GO:0003700 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005667 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00134264001 | InterPro:IPR036388 | InterPro:IPR038168 | PFAM:PF02319 | PFAM:PF08781 | PIRSF:PIRSF009404 |
| PANTHER:PTHR12548 | PANTHER:PTHR12548:SF15 | SMART:SM01138 | SMART:SM01372 | SUPFAM:SSF144074 | SUPFAM:SSF46785 |
| InterPro:TF_DP_C_sf | InterPro:Transc_factor_DP_C | InterPro:Transcrpt_fac_DP | UniParc:UPI0004EDC3DB | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf |
| SEG:seg | : | : | : | : | : |
Description
BnaC03g01210D
Coordinates
chrLK031823:+:543499..545607
Molecular Weight (calculated)
35605.5 Da
IEP (calculated)
6.803
GRAVY (calculated)
-0.841
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTTPSNSAQ SVSSSGSMGS PSSRTEQTTT VATTPASDDP ASQLASGSGK KKKKRRGQRA SGPDKNGRGL RQFSLKVCEK VESKGRTTYN EVADELVAEF
101: ALPNNEDTSP DQQQYDEKNI RRRVYDALNV LMAMDIVSKY QKEILWRGLP RTSLSDIQEL KAERLSLRNR IEKKTEYSQE LEEHHVGLQN LIRRNEHLYS
201: SGNAPSGGVT LPFILVQTRP HATVEVEISE DMQLVHFDFN TTPFELHDDN FVLKTMKFCD QPPLNNGHNN NSHETSHSFV PEDNKEGLST DPKLPQQPVN
301: APVTSPPLSG IIKSSVKTEN
101: ALPNNEDTSP DQQQYDEKNI RRRVYDALNV LMAMDIVSKY QKEILWRGLP RTSLSDIQEL KAERLSLRNR IEKKTEYSQE LEEHHVGLQN LIRRNEHLYS
201: SGNAPSGGVT LPFILVQTRP HATVEVEISE DMQLVHFDFN TTPFELHDDN FVLKTMKFCD QPPLNNGHNN NSHETSHSFV PEDNKEGLST DPKLPQQPVN
301: APVTSPPLSG IIKSSVKTEN
001: MTTTGSNSNH NHHESNNNNN NPSTRSWGTA VSGQSVSTSG SMGSPSSRSE QTITVVTSTS DTTFQRLNNL DIQGDDAGSQ GASGVKKKKR GQRAAGPDKT
101: GRGLRQFSMK VCEKVESKGR TTYNEVADEL VAEFALPNND GTSPDQQQYD EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW RGLPRTSLSD IEELKNERLS
201: LRNRIEKKTA YSQELEEQYV GLQNLIQRNE HLYSSGNAPS GGVALPFILV QTRPHATVEV EISEDMQLVH FDFNSTPFEL HDDNFVLKTM KFCDQPPQQP
301: NGRNNSQLVC HNFTPENPNK GPSTGPTPQL DMYETHLQSQ QHQQHSQLQI IPMPETNNVT SSADTAPVKS PSLPGIMNSS MKPEN
101: GRGLRQFSMK VCEKVESKGR TTYNEVADEL VAEFALPNND GTSPDQQQYD EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW RGLPRTSLSD IEELKNERLS
201: LRNRIEKKTA YSQELEEQYV GLQNLIQRNE HLYSSGNAPS GGVALPFILV QTRPHATVEV EISEDMQLVH FDFNSTPFEL HDDNFVLKTM KFCDQPPQQP
301: NGRNNSQLVC HNFTPENPNK GPSTGPTPQL DMYETHLQSQ QHQQHSQLQI IPMPETNNVT SSADTAPVKS PSLPGIMNSS MKPEN
Arabidopsis Description
DPBTranscription factor-like protein DPB [Source:UniProtKB/Swiss-Prot;Acc:Q9FNY2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.