Factsheet for PGSC0003DMT400021592

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009682
PGSC0003DMT400011661
PGSC0003DMT400021687
PGSC0003DMT400030280
PGSC0003DMT400051207
PGSC0003DMT400055712
PGSC0003DMT400062212
PGSC0003DMT400064893
PGSC0003DMT400067117	cytosol, nucleus
PGSC0003DMT400070712

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03415.1	PGSC0003DMT400011661	AT1G10840.1	20706207
AT5G03415.1	PGSC0003DMT400055712	AT1G10840.1	20706207
AT5G03415.1	PGSC0003DMT400009682	AT1G47870.1	11891240
AT5G03415.1	PGSC0003DMT400021687	AT1G71380.1	20706207
AT5G03415.1	PGSC0003DMT400064893	AT2G05830.1	20706207
AT5G03415.1	PGSC0003DMT400070712	AT3G04620.1	20706207
AT5G03415.1	PGSC0003DMT400030280	AT3G12280.1	20706207
AT5G03415.1	PGSC0003DMT400051207	AT4G19210.1	20706207
AT5G03415.1	PGSC0003DMT400062212	AT4G24820.1	20706207
AT5G03415.1	PGSC0003DMT400067117	AT5G11300.1	20407024
AT5G03415.1	PGSC0003DMT400067117	AT5G11300.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g078430.1.1	Tomato	nucleus	96.07	96.61
KRH27723	Soybean	nucleus	70.79	74.78
KRH77687	Soybean	nucleus	69.38	73.08
VIT_08s0040g01300.t01	Wine grape	nucleus	21.07	65.22
CDX80867	Canola	nucleus	55.34	61.56
AT5G03415.1	Thale cress	nucleus	66.29	61.3
GSMUA_Achr5P12500_001	Banana	mitochondrion, nucleus	25.84	59.74
CDY44365	Canola	nucleus	57.3	59.13
VIT_08s0040g01330.t01	Wine grape	nucleus	56.46	56.46
Bra005763.1-P	Field mustard	nucleus	56.46	55.07
CDY11252	Canola	nucleus	55.06	54.29
PGSC0003DMT400023036	Potato	cytosol, nucleus, plastid	36.24	49.62

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.140.80	EntrezGene:102589175	MapMan:13.1.2.3	MapMan:15.5.10	ncoils:Coil
InterPro:E2F-DP_heterodim	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005667	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006351	GO:GO:0006355
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0042023
GO:GO:0046982	InterPro:IPR036388	InterPro:IPR038168	UniProt:M1AFD6	PFAM:PF02319	PFAM:PF08781
EnsemblPlantsGene:PGSC0003DMG400008373	PGSC:PGSC0003DMG400008373	EnsemblPlants:PGSC0003DMT400021592	PIRSF:PIRSF009404	PANTHER:PTHR12548	PANTHER:PTHR12548:SF15
SMART:SM01138	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785	InterPro:TF_DP_C_sf	InterPro:Transc_factor_DP_C
InterPro:Transcrpt_fac_DP	UniParc:UPI00029625E9	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_006362266.1	SEG:seg

Description

DP1 [Source:PGSC_GENE;Acc:PGSC0003DMG400008373]

Coordinates

chr10:-:59228954..59236587

Molecular Weight (calculated)

38835.4 Da

IEP (calculated)

7.325

GRAVY (calculated)

-0.740

Length

356 amino acids

Sequence
(BLAST)

001: MLNNLEDGGK NPSEVSRGAN GRGGGGTRSW GTTVSGQSVS TSSSIGSPSS RSEAAMATPA SDNTFLRLNN LDIHADDAGS QGTAGNRKKK RAQRATGGDK
101: SGRGLRQFSM KVCEKVESKG RTTYNEVADE LVAEFSDATN SVAGPDQKQY DEKNIRRRVY DALNVLMAMD IISKDKKEIQ WKGLPRTDAN DIEELKTERL
201: NLRNRIEKKA AYLEELEDQY VGLQNLIKRN DQLYGSGNAP SGGVALPFIL VQTRPHATVE VEISEDMQLV HFDFNSTPFE LHDDNYILKA MNFCGRPNDS
301: AVPQNLSADG GEGPSSRMAN MFQHHIAHPS VPNSSGKLPT SPPLPGILKA RVKHEH

Best Arabidopsis Sequence Match ( AT5G03415.1 )
(BLAST)

001: MTTTGSNSNH NHHESNNNNN NPSTRSWGTA VSGQSVSTSG SMGSPSSRSE QTITVVTSTS DTTFQRLNNL DIQGDDAGSQ GASGVKKKKR GQRAAGPDKT
101: GRGLRQFSMK VCEKVESKGR TTYNEVADEL VAEFALPNND GTSPDQQQYD EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW RGLPRTSLSD IEELKNERLS
201: LRNRIEKKTA YSQELEEQYV GLQNLIQRNE HLYSSGNAPS GGVALPFILV QTRPHATVEV EISEDMQLVH FDFNSTPFEL HDDNFVLKTM KFCDQPPQQP
301: NGRNNSQLVC HNFTPENPNK GPSTGPTPQL DMYETHLQSQ QHQQHSQLQI IPMPETNNVT SSADTAPVKS PSLPGIMNSS MKPEN

Arabidopsis Description

DPBTranscription factor-like protein DPB [Source:UniProtKB/Swiss-Prot;Acc:Q9FNY2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.