Factsheet for PGSC0003DMT400064893

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g022210.2.1	Tomato	cytosol, plastid	97.33	97.33
AT2G05830.1	Thale cress	cytosol	75.67	75.67
Bra015169.1-P	Field mustard	cytosol	74.87	75.27
CDY33397	Canola	cytosol	74.87	75.07
CDY70356	Canola	cytosol	74.87	75.07
KXG28235	Sorghum	cytosol	70.32	71.66
Zm00001d049042_P001	Maize	extracellular	70.05	71.39
KRH37507	Soybean	cytosol	68.18	68.18
TraesCS4D01G104900.1	Wheat	cytosol	66.84	68.12
GSMUA_Achr6P29170_001	Banana	cytosol	69.79	67.79
KRH12557	Soybean	nucleus	34.76	66.33
TraesCS4A01G204000.2	Wheat	cytosol	68.98	64.34
HORVU4Hr1G016410.7	Barley	cytosol	67.91	60.33
TraesCS4B01G107800.1	Wheat	cytosol	68.45	56.51
VIT_17s0053g00580.t01	Wine grape	cytosol	9.09	46.58
CDY09484	Canola	cytosol	9.09	38.2
CDY04295	Canola	mitochondrion	20.32	31.93
Os11t0217300-01	Rice	cytosol, plasma membrane	15.24	16.15

Protein Annotations

KEGG:00270+5.3.1.23	Gene3D:1.20.120.1840	EntrezGene:102596204	Gene3D:3.40.50.10470	MapMan:4.1.2.2.6.4.3	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058
GO:GO:0009086	GO:GO:0009506	GO:GO:0009719	GO:GO:0009987	GO:GO:0016853	GO:GO:0019284
GO:GO:0019509	GO:GO:0044237	GO:GO:0044249	GO:GO:0046523	GO:GO:0071281	GO:GO:0071369
GO:GO:0071732	InterPro:IF-2B-related	InterPro:IF-M1Pi	InterPro:Initiation_fac_2B_a/b/d	UniProt:M1CD27	HAMAP:MF_01678
InterPro:NagB/RpiA_transferase-like	PFAM:PF01008	EnsemblPlantsGene:PGSC0003DMG400025199	PGSC:PGSC0003DMG400025199	EnsemblPlants:PGSC0003DMT400064893	PANTHER:PTHR43475
PANTHER:PTHR43475:SF1	SUPFAM:SSF100950	TIGRFAMs:TIGR00512	TIGRFAMs:TIGR00524	UniParc:UPI000294F973	RefSeq:XP_006346696.1
SEG:seg	:	:	:	:	:

Description

CIG2 [Source:PGSC_GENE;Acc:PGSC0003DMG400025199]

Coordinates

chr8:-:25782315..25791851

Molecular Weight (calculated)

39457.0 Da

IEP (calculated)

5.421

GRAVY (calculated)

0.108

Length

374 amino acids

Sequence
(BLAST)

001: MSVGSEGDKT LEAICYRRGS LQLLDQRKLP LETLYLDIHD TNDAWDAIKE MVVRGAPAIA IAAALSLAVE ISNLASFDGT SHDASVFLSK KLDFLVSSRP
101: TAVNLSDAAV KLKEVISKAA ATAKETNSVF QAYIEAAEVM LEDDVTSNKA IGSYGASFIK NYLTDSKNIT ILTHCNTGSL ATAGYGTALG VIRALYADGA
201: LERAYCTETR PFNQGSRLTA FELVHENIPA TLIADSAAAA LMNAGRVKAV IVGADRVAAN GDTANKIGTY NLAVSAMHHG IPFYVAAPLT SVDLSLSSGQ
301: EIVIEERSPK ELLHTRGGLG EQVAASGISV WNPAFDVTPA KLISGIITEK GVITKNGTDT FDIAGFVRKT SGNL

Best Arabidopsis Sequence Match ( AT2G05830.1 )
(BLAST)

001: MSGEGDTTLK AICYKPGSLQ LLDQRKLPLE TIYLEIRDAS DGWSAIQEMV VRGAPAIAIA AALSLAVEVF NFHGFDGSAS DAVAFLENKL DYLVSSRPTA
101: VNLADAALKL KHVIAKALAT ATEAKSIFKA YIEASEDMLE DDVVSNKAIG NFGLSLLRQQ AKNPDKLSVL THCNTGSLAT AGYGTALGVI RALHTQGILE
201: RAYCTETRPF NQGSRLTAFE LVHEKIPATL IADSAAAALM KDGRVDGVIV GADRVASNGD TANKIGTYSL ALCAKHHGIP FYVAAPLTSV DLSLSSGKEI
301: VIEERSPKEL MHTHGGLGER IAAPGISVWN PAFDMTPAEL IAGIITEKGV ITKNGNDTFD ISSFAKKITG NSSR

Arabidopsis Description

Methylthioribose-1-phosphate isomerase [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.