Factsheet for TraesCS4B01G107800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G104900.1	Wheat	cytosol	74.83	92.37
TraesCS4A01G204000.2	Wheat	cytosol	78.59	88.78
Zm00001d049042_P001	Maize	extracellular	71.3	88.01
KXG28235	Sorghum	cytosol	70.64	87.19
Os11t0216900-02	Rice	cytosol	68.65	83.16
HORVU4Hr1G016410.7	Barley	cytosol	74.39	80.05
GSMUA_Achr6P29170_001	Banana	cytosol	62.69	73.77
VIT_11s0016g00830.t01	Wine grape	cytosol	57.4	69.15
Solyc08g022210.2.1	Tomato	cytosol, plastid	56.51	68.45
PGSC0003DMT400064893	Potato	cytosol	56.51	68.45
CDY33397	Canola	cytosol	54.53	66.22
Bra015169.1-P	Field mustard	cytosol	54.3	66.13
CDY70356	Canola	cytosol	54.3	65.95
AT2G05830.1	Thale cress	cytosol	53.2	64.44
KRH12557	Soybean	nucleus	27.15	62.76
KRH37507	Soybean	cytosol	50.99	61.76
VIT_17s0053g00580.t01	Wine grape	cytosol	7.28	45.21
CDY09484	Canola	cytosol	7.28	37.08
CDY04295	Canola	mitochondrion	17.22	32.77

Protein Annotations

KEGG:00270+5.3.1.23	Gene3D:1.20.120.1840	Gene3D:3.40.50.10470	MapMan:4.1.2.2.6.4.3	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0044237	GO:GO:0044249	InterPro:IF-2B-related	InterPro:IF-M1Pi
InterPro:Initiation_fac_2B_a/b/d	HAMAP:MF_01678	InterPro:NagB/RpiA_transferase-like	PFAM:PF01008	PANTHER:PTHR43475	PANTHER:PTHR43475:SF1
SUPFAM:SSF100950	TIGRFAMs:TIGR00512	TIGRFAMs:TIGR00524	EnsemblPlantsGene:TraesCS4B01G107800	EnsemblPlants:TraesCS4B01G107800.1	SEG:seg

Description

No Description!

Coordinates

chr4B:+:117768448..117772423

Molecular Weight (calculated)

48571.1 Da

IEP (calculated)

8.995

GRAVY (calculated)

-0.053

Length

453 amino acids

Sequence
(BLAST)

001: MTMHARPAQS PAYFQRTEYR EYEEPKGLER KVAKGSRLGI GTLLRRGVRD NIKGKIAAVR SPSHLHPLFF TFFHLSRPSL SKFPARMGES SALQSILYDR
101: GALRLLDQRK LPLEEVYIDV KDSADGWNAI RDMVVRGAPA IAIAAALSLA VEVNDHDFTG TPVEAALFVS KKLEYLVSSR PTAVNLSDAA TKLQNLVSRT
201: AETAKDAKSI FQVFIEAAEA MLVDDVADNK AIGSHGAEFL QRQLGSSRNI SVLTHCNTGS LATAGYGTAL GVIRALHSGG VLEKAFCTET RPFNQGSRLT
301: AFELVHDKIP ATLIADSAAA ALMNNGQVQA VIVGADRIAA NGDTANKIGT YNLSISAKHH GVQFYVAAPV TSIDLSLPSG KQIVIEERSS KELLNSEGGL
401: GKQVAASGIQ VWNPAFDVTP ASLITAIITE KGVITKSDPN GSFDIKGFIE CAK

Best Arabidopsis Sequence Match ( AT2G05830.1 )
(BLAST)

001: MSGEGDTTLK AICYKPGSLQ LLDQRKLPLE TIYLEIRDAS DGWSAIQEMV VRGAPAIAIA AALSLAVEVF NFHGFDGSAS DAVAFLENKL DYLVSSRPTA
101: VNLADAALKL KHVIAKALAT ATEAKSIFKA YIEASEDMLE DDVVSNKAIG NFGLSLLRQQ AKNPDKLSVL THCNTGSLAT AGYGTALGVI RALHTQGILE
201: RAYCTETRPF NQGSRLTAFE LVHEKIPATL IADSAAAALM KDGRVDGVIV GADRVASNGD TANKIGTYSL ALCAKHHGIP FYVAAPLTSV DLSLSSGKEI
301: VIEERSPKEL MHTHGGLGER IAAPGISVWN PAFDMTPAEL IAGIITEKGV ITKNGNDTFD ISSFAKKITG NSSR

Arabidopsis Description

Methylthioribose-1-phosphate isomerase [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.