CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049042_P001	Maize	extracellular	95.91	95.91
Os11t0216900-02	Rice	cytosol	86.65	85.03
TraesCS4D01G104900.1	Wheat	cytosol	83.92	83.92
TraesCS4A01G204000.2	Wheat	cytosol	87.19	79.8
GSMUA_Achr6P29170_001	Banana	cytosol	77.11	73.51
HORVU4Hr1G016410.7	Barley	cytosol	84.2	73.4
TraesCS4B01G107800.1	Wheat	cytosol	87.19	70.64
PGSC0003DMT400064893	Potato	cytosol	71.66	70.32
VIT_11s0016g00830.t01	Wine grape	cytosol	71.66	69.95
Solyc08g022210.2.1	Tomato	cytosol, plastid	70.84	69.52
CDY33397	Canola	cytosol	68.94	67.83
Bra015169.1-P	Field mustard	cytosol	68.66	67.74
CDY70356	Canola	cytosol	68.66	67.56
KRH12557	Soybean	nucleus	35.69	66.84
AT2G05830.1	Thale cress	cytosol	67.3	66.04
KRH37507	Soybean	cytosol	65.4	64.17
VIT_17s0053g00580.t01	Wine grape	cytosol	8.99	45.21
CDY09484	Canola	cytosol	9.81	40.45
CDY04295	Canola	mitochondrion	19.89	30.67

Protein Annotations

KEGG:00270+5.3.1.23	Gene3D:1.20.120.1840	Gene3D:3.40.50.10470	MapMan:4.1.2.2.6.4.3	UniProt:A0A1B6PRF6	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058
GO:GO:0009086	GO:GO:0009506	GO:GO:0009719	GO:GO:0009987	GO:GO:0016853	GO:GO:0019284
GO:GO:0019509	GO:GO:0044237	GO:GO:0044249	GO:GO:0046523	GO:GO:0071281	GO:GO:0071369
GO:GO:0071732	InterPro:IF-2B-related	InterPro:IF-M1Pi	InterPro:Initiation_fac_2B_a/b/d	EnsemblPlants:KXG28235	ProteinID:KXG28235
ProteinID:KXG28235.1	HAMAP:MF_01678	InterPro:NagB/RpiA_transferase-like	PFAM:PF01008	PANTHER:PTHR43475	PANTHER:PTHR43475:SF1
MetaCyc:PWY-4361	MetaCyc:PWY-7174	EnsemblPlantsGene:SORBI_3005G100800	SUPFAM:SSF100950	TIGRFAMs:TIGR00512	TIGRFAMs:TIGR00524
UniParc:UPI0001C805CC	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:16905311..16910244

Molecular Weight (calculated)

38563.1 Da

IEP (calculated)

5.659

GRAVY (calculated)

0.117

Length

367 amino acids

Sequence
(BLAST)

001: MVGSDALQSI VYARGSLRLL DQRKLPLDMD YIDVKNSVDG WNAIRDMVVR GAPAIAIAAA LALAVEVSDL DFIGTPGEAA SFVSKKLEYL VSSRPTAVNL
101: SDAATKLQTL VSKAAETAKD SKAIFQAYIE AAETMLVDDV ADNKAIGSHG AEFLQRQLAN SEKISVLTHC NTGSLATAGY GTALGVIRAL HSGGVLEKAF
201: CTETRPFNQG SRLTAFELVH EKIPATLIAD SAAAALMKQG HVKAVIVGAD RIAANGDTAN KIGTYNLAIS AKHHSVQFYV AAPVTSIDLS LPSGDEIVIE
301: ERSPKELLNS EGGLGKQVAA SGISVWNPAF DVTPANLITA IITEKGVITK TDADGSFDIK GFLQPAK

Best Arabidopsis Sequence Match ( AT2G05830.1 )
(BLAST)

001: MSGEGDTTLK AICYKPGSLQ LLDQRKLPLE TIYLEIRDAS DGWSAIQEMV VRGAPAIAIA AALSLAVEVF NFHGFDGSAS DAVAFLENKL DYLVSSRPTA
101: VNLADAALKL KHVIAKALAT ATEAKSIFKA YIEASEDMLE DDVVSNKAIG NFGLSLLRQQ AKNPDKLSVL THCNTGSLAT AGYGTALGVI RALHTQGILE
201: RAYCTETRPF NQGSRLTAFE LVHEKIPATL IADSAAAALM KDGRVDGVIV GADRVASNGD TANKIGTYSL ALCAKHHGIP FYVAAPLTSV DLSLSSGKEI
301: VIEERSPKEL MHTHGGLGER IAAPGISVWN PAFDMTPAEL IAGIITEKGV ITKNGNDTFD ISSFAKKITG NSSR

Arabidopsis Description

Methylthioribose-1-phosphate isomerase [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.