Factsheet for VIT_11s0016g00830.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015169.1-P	Field mustard	cytosol	72.07	72.85
CDY33397	Canola	cytosol	72.07	72.65
CDY70356	Canola	cytosol	71.54	72.12
Zm00001d049042_P001	Maize	extracellular	70.21	71.93
AT2G05830.1	Thale cress	cytosol	71.54	71.93
KXG28235	Sorghum	cytosol	69.95	71.66
KRH37507	Soybean	cytosol	69.15	69.52
TraesCS4D01G104900.1	Wheat	cytosol	67.29	68.94
GSMUA_Achr6P29170_001	Banana	cytosol	70.21	68.57
TraesCS4A01G204000.2	Wheat	cytosol	69.95	65.59
KRH12557	Soybean	nucleus	32.98	63.27
VIT_17s0053g00580.t01	Wine grape	cytosol	12.23	63.01
HORVU4Hr1G016410.7	Barley	cytosol	68.62	61.28
TraesCS4B01G107800.1	Wheat	cytosol	69.15	57.4
CDY09484	Canola	cytosol	8.51	35.96
CDY04295	Canola	mitochondrion	20.48	32.35
Os11t0217300-01	Rice	cytosol, plasma membrane	13.83	14.73

Protein Annotations

KEGG:00270+5.3.1.23	Gene3D:1.20.120.1840	EntrezGene:100268031	wikigene:100268031	Gene3D:3.40.50.10470	MapMan:4.1.2.2.6.4.3
ProteinID:CCB51385	ProteinID:CCB51385.1	UniProt:D7TCD0	EMBL:FN595756	GO:GO:0000159	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009086
GO:GO:0009987	GO:GO:0016853	GO:GO:0019509	GO:GO:0019538	GO:GO:0019888	GO:GO:0030234
GO:GO:0043666	GO:GO:0044237	GO:GO:0044249	GO:GO:0046523	GO:GO:0050790	InterPro:IF-2B-related
InterPro:IF-M1Pi	InterPro:Initiation_fac_2B_a/b/d	EntrezGene:M1PI	wikigene:M1PI	HAMAP:MF_01678	InterPro:NagB/RpiA_transferase-like
PFAM:PF01008	PANTHER:PTHR43475	PANTHER:PTHR43475:SF1	SUPFAM:SSF100950	TIGR:TC52971	TIGR:TC58957
TIGRFAMs:TIGR00512	TIGRFAMs:TIGR00524	UniParc:UPI00015C910C	ArrayExpress:VIT_11s0016g00830	EnsemblPlantsGene:VIT_11s0016g00830	EnsemblPlants:VIT_11s0016g00830.t01
unigene:Vvi.3396	RefSeq:XP_002277806	RefSeq:XP_002277806.1	RefSeq:XP_010656105.1	SEG:seg	:

Description

Methylthioribose-1-phosphate isomerase [Source:UniProtKB/Swiss-Prot;Acc:D7TCD0]

Coordinates

chr11:+:754520..759761

Molecular Weight (calculated)

39841.4 Da

IEP (calculated)

5.555

GRAVY (calculated)

0.136

Length

376 amino acids

Sequence
(BLAST)

001: MADSNSKHQD SLQSICYKRG SLQLLDQRKL PLETVYLEIK GADDGWHAIR DMVVRGAPAI AIAAALSLAV EVSNLEDFIG TSDDAASFLN SKLDYLVTSR
101: PTAVNLSDAV TKLKGVISNA AATAFEAMSV FQAFLEAAED MLREDVAANR AIGLYGASFL QSHIKDSKNL SILTHCNTGS LATAGYGTAL GVIRSVHAEG
201: ILLRAYCTET RPFNQGSRLT AFELVHDNIP ATLIADSAAA ALMQAGRVDA VIVGADRVAA NGDTANKIGT YSLALSAKHH HIPFFVAAPL TSIDLTLSSG
301: QEIVIEERSP KELLNSRGGL GEQVAASGIC VWNPAFDVTP ADLIAGIITE KGVITKTGDV FDIKDFIHNA TSHCCK

Best Arabidopsis Sequence Match ( AT2G05830.1 )
(BLAST)

001: MSGEGDTTLK AICYKPGSLQ LLDQRKLPLE TIYLEIRDAS DGWSAIQEMV VRGAPAIAIA AALSLAVEVF NFHGFDGSAS DAVAFLENKL DYLVSSRPTA
101: VNLADAALKL KHVIAKALAT ATEAKSIFKA YIEASEDMLE DDVVSNKAIG NFGLSLLRQQ AKNPDKLSVL THCNTGSLAT AGYGTALGVI RALHTQGILE
201: RAYCTETRPF NQGSRLTAFE LVHEKIPATL IADSAAAALM KDGRVDGVIV GADRVASNGD TANKIGTYSL ALCAKHHGIP FYVAAPLTSV DLSLSSGKEI
301: VIEERSPKEL MHTHGGLGER IAAPGISVWN PAFDMTPAEL IAGIITEKGV ITKNGNDTFD ISSFAKKITG NSSR

Arabidopsis Description

Methylthioribose-1-phosphate isomerase [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.