Factsheet for Zm00001d049042_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG28235	Sorghum	cytosol	95.91	95.91
Os11t0216900-02	Rice	cytosol	85.83	84.22
TraesCS4D01G104900.1	Wheat	cytosol	84.2	84.2
TraesCS4A01G204000.2	Wheat	cytosol	88.01	80.55
HORVU4Hr1G016410.7	Barley	cytosol	85.29	74.35
GSMUA_Achr6P29170_001	Banana	cytosol	77.11	73.51
TraesCS4B01G107800.1	Wheat	cytosol	88.01	71.3
VIT_11s0016g00830.t01	Wine grape	cytosol	71.93	70.21
PGSC0003DMT400064893	Potato	cytosol	71.39	70.05
Solyc08g022210.2.1	Tomato	cytosol, plastid	70.57	69.25
CDY33397	Canola	cytosol	68.94	67.83
Bra015169.1-P	Field mustard	cytosol	68.66	67.74
CDY70356	Canola	cytosol	68.66	67.56
KRH12557	Soybean	nucleus	35.15	65.82
AT2G05830.1	Thale cress	cytosol	67.03	65.78
KRH37507	Soybean	cytosol	65.67	64.44
VIT_17s0053g00580.t01	Wine grape	cytosol	9.26	46.58
CDY09484	Canola	cytosol	9.54	39.33
CDY04295	Canola	mitochondrion	20.16	31.09

Protein Annotations

KEGG:00270+5.3.1.23	Gene3D:1.20.120.1840	Gene3D:3.40.50.10470	MapMan:4.1.2.2.6.4.3	EntrezGene:542191	ProteinID:AQK49472.1
EMBL:AY738148	UniProt:B6TZD1	EMBL:BT055692	EMBL:EU965753	EMBL:EU970346	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058
GO:GO:0009086	GO:GO:0009506	GO:GO:0009719	GO:GO:0009987	GO:GO:0016853	GO:GO:0019284
GO:GO:0019509	GO:GO:0044237	GO:GO:0044249	GO:GO:0046523	GO:GO:0071281	GO:GO:0071369
GO:GO:0071732	InterPro:IF-2B-related	InterPro:IF-M1Pi	InterPro:Initiation_fac_2B_a/b/d	UniProt:K7U9P8	HAMAP:MF_01678
InterPro:NagB/RpiA_transferase-like	PFAM:PF01008	PANTHER:PTHR43475	PANTHER:PTHR43475:SF1	SUPFAM:SSF100950	TIGRFAMs:TIGR00512
TIGRFAMs:TIGR00524	UniParc:UPI000182ED6B	EnsemblPlantsGene:Zm00001d049042	EnsemblPlants:Zm00001d049042_P001	EnsemblPlants:Zm00001d049042_T001	SEG:seg

Description

IDI2Methylthioribose-1-phosphate isomerase

Coordinates

chr4:-:13682555..13688155

Molecular Weight (calculated)

38624.2 Da

IEP (calculated)

5.926

GRAVY (calculated)

0.135

Length

367 amino acids

Sequence
(BLAST)

001: MAASDALQSI VYSRGSLRLL DQRKLPLEME YIDVKSSADG WNAIRDMVVR GAPAIAIAAA LALAVEVSDL DFIGTPEEAA SFVSKKLEYL VSSRPTAVNL
101: SDAATKLQTL VSKAAETAKD SKSIFQVYIE AAETMLVDDV ADNKAIGSHG AVFLQRQLAN SKKISVLTHC NTGSLATAGY GTALGVIRAL HSGGVLEKAF
201: CTETRPFNQG SRLTAFELVH EKIPATLIAD SAAAALMKQG HVQAVIVGAD RIAANGDTAN KIGTYNLAIS AKHHSVQFYV SAPVTSIDLS LPSGDEIVIE
301: ERSPKELLNS EGGLGKQVAA SGISVWNPAF DVTPANLITA IITEKGVITK TDADGSFDIK GFLLPAK

Best Arabidopsis Sequence Match ( AT2G05830.1 )
(BLAST)

001: MSGEGDTTLK AICYKPGSLQ LLDQRKLPLE TIYLEIRDAS DGWSAIQEMV VRGAPAIAIA AALSLAVEVF NFHGFDGSAS DAVAFLENKL DYLVSSRPTA
101: VNLADAALKL KHVIAKALAT ATEAKSIFKA YIEASEDMLE DDVVSNKAIG NFGLSLLRQQ AKNPDKLSVL THCNTGSLAT AGYGTALGVI RALHTQGILE
201: RAYCTETRPF NQGSRLTAFE LVHEKIPATL IADSAAAALM KDGRVDGVIV GADRVASNGD TANKIGTYSL ALCAKHHGIP FYVAAPLTSV DLSLSSGKEI
301: VIEERSPKEL MHTHGGLGER IAAPGISVWN PAFDMTPAEL IAGIITEKGV ITKNGNDTFD ISSFAKKITG NSSR

Arabidopsis Description

Methylthioribose-1-phosphate isomerase [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.