Factsheet for Solyc08g022210.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

cytosol 5
nucleus 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 26371478

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064893	Potato	cytosol	97.33	97.33
AT2G05830.1	Thale cress	cytosol	74.33	74.33
Bra015169.1-P	Field mustard	cytosol	73.53	73.92
CDY33397	Canola	cytosol	73.53	73.73
CDY70356	Canola	cytosol	73.53	73.73
KXG28235	Sorghum	cytosol	69.52	70.84
Zm00001d049042_P001	Maize	extracellular	69.25	70.57
TraesCS4D01G104900.1	Wheat	cytosol	66.31	67.57
GSMUA_Achr6P29170_001	Banana	cytosol	69.25	67.27
KRH37507	Soybean	cytosol	66.84	66.84
KRH12557	Soybean	nucleus	34.76	66.33
TraesCS4A01G204000.2	Wheat	cytosol	68.18	63.59
HORVU4Hr1G016410.7	Barley	cytosol	67.11	59.62
TraesCS4B01G107800.1	Wheat	cytosol	68.45	56.51
VIT_17s0053g00580.t01	Wine grape	cytosol	9.09	46.58
CDY09484	Canola	cytosol	8.82	37.08
CDY04295	Canola	mitochondrion	20.32	31.93
Os11t0217300-01	Rice	cytosol, plasma membrane	15.78	16.71

Protein Annotations

KEGG:00270+5.3.1.23	Gene3D:1.20.120.1840	Gene3D:3.40.50.10470	MapMan:4.1.2.2.6.4.3	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009086
GO:GO:0009506	GO:GO:0009719	GO:GO:0009987	GO:GO:0016853	GO:GO:0019284	GO:GO:0019509
GO:GO:0044237	GO:GO:0044249	GO:GO:0046523	GO:GO:0071281	GO:GO:0071369	GO:GO:0071732
InterPro:IF-2B-related	InterPro:IF-M1Pi	InterPro:Initiation_fac_2B_a/b/d	UniProt:K4CJP1	HAMAP:MF_01678	InterPro:NagB/RpiA_transferase-like
PFAM:PF01008	PANTHER:PTHR43475	PANTHER:PTHR43475:SF1	SUPFAM:SSF100950	EnsemblPlantsGene:Solyc08g022210.2	EnsemblPlants:Solyc08g022210.2.1
TIGRFAMs:TIGR00512	TIGRFAMs:TIGR00524	UniParc:UPI000276BA9E	SEG:seg	:	:

Description

Methylthioribose-1-phosphate isomerase [Source:UniProtKB/TrEMBL;Acc:K4CJP1]

Coordinates

chr8:+:30362857..30370766

Molecular Weight (calculated)

39398.0 Da

IEP (calculated)

5.874

GRAVY (calculated)

0.139

Length

374 amino acids

Sequence
(BLAST)

001: MSVGSGGDKT LEAICYRRGS LQLLDQRKLP LETLHLDIHD TNDAWDAIKE MVVRGAPAIA IAAALSLAVE VSNLASFDGT SHDASVFLSK KLDFLVSSRP
101: TAVNLSDSAV KLKEVISKAA AIAKEANSVF QAYIEAAEVM LEDDVTSNKA IGSYGASFIK NYLTDSKNIT ILTHCNTGSL ATAGYGTALG VIRALYADGA
201: LERAYCTETR PFNQGSRLTA FELVHENIPA TLIADSAAAA LMNAGRVKAV IVGADRIAAN GDTANKIGTY NLAVSAMHHG IPFYVAAPLT SVDLSLSSGQ
301: EIVIEERSPK ELLHTRGGLG EQVAASGILV WNPAFDVTQA KLISGIITEK GVITKNGTDT FDIAGFVRKT AGNL

Best Arabidopsis Sequence Match ( AT2G05830.1 )
(BLAST)

001: MSGEGDTTLK AICYKPGSLQ LLDQRKLPLE TIYLEIRDAS DGWSAIQEMV VRGAPAIAIA AALSLAVEVF NFHGFDGSAS DAVAFLENKL DYLVSSRPTA
101: VNLADAALKL KHVIAKALAT ATEAKSIFKA YIEASEDMLE DDVVSNKAIG NFGLSLLRQQ AKNPDKLSVL THCNTGSLAT AGYGTALGVI RALHTQGILE
201: RAYCTETRPF NQGSRLTAFE LVHEKIPATL IADSAAAALM KDGRVDGVIV GADRVASNGD TANKIGTYSL ALCAKHHGIP FYVAAPLTSV DLSLSSGKEI
301: VIEERSPKEL MHTHGGLGER IAAPGISVWN PAFDMTPAEL IAGIITEKGV ITKNGNDTFD ISSFAKKITG NSSR

Arabidopsis Description

Methylthioribose-1-phosphate isomerase [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.