CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytoskeleton, cytosol, mitochondrion
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0053g00580.t01	Wine grape	cytosol	14.29	38.36
KRH37507	Soybean	cytosol	72.96	38.24
Bra015169.1-P	Field mustard	cytosol	68.37	36.02
CDY33397	Canola	cytosol	68.37	35.92
CDY70356	Canola	cytosol	68.37	35.92
KXG28235	Sorghum	cytosol	66.84	35.69
Zm00001d049042_P001	Maize	extracellular	65.82	35.15
PGSC0003DMT400064893	Potato	cytosol	66.33	34.76
Solyc08g022210.2.1	Tomato	cytosol, plastid	66.33	34.76
AT2G05830.1	Thale cress	cytosol	65.82	34.49
TraesCS4D01G104900.1	Wheat	cytosol	62.24	33.24
VIT_11s0016g00830.t01	Wine grape	cytosol	63.27	32.98
CDY09484	Canola	cytosol	14.8	32.58
GSMUA_Achr6P29170_001	Banana	cytosol	61.73	31.43
TraesCS4A01G204000.2	Wheat	cytosol	62.24	30.42
HORVU4Hr1G016410.7	Barley	cytosol	61.73	28.74
TraesCS4B01G107800.1	Wheat	cytosol	62.76	27.15
CDY04295	Canola	mitochondrion	13.27	10.92
Os11t0217300-01	Rice	cytosol, plasma membrane	12.76	7.08

Protein Annotations

KEGG:00270+5.3.1.23	Gene3D:1.20.120.1840	Gene3D:3.40.50.10470	MapMan:4.1.2.2.6.4.3	UniProt:A0A0R0G2K6	EMBL:ACUP02009340
EnsemblPlantsGene:GLYMA_15G178600	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0044237	InterPro:IF-2B-related
EnsemblPlants:KRH12557	ProteinID:KRH12557	ProteinID:KRH12557.1	InterPro:NagB/RpiA_transferase-like	PFAM:PF01008	PANTHER:PTHR43475
PANTHER:PTHR43475:SF1	MetaCyc:PWY-4361	MetaCyc:PWY-7174	SUPFAM:SSF100950	UniParc:UPI0006ED73D3	SEG:seg

Description

hypothetical protein

Coordinates

chr15:-:17040321..17041991

Molecular Weight (calculated)

20922.7 Da

IEP (calculated)

5.916

GRAVY (calculated)

0.068

Length

196 amino acids

Sequence
(BLAST)

001: MYIDAAEVML EDDVASNRAI GSYGASIIQH QTEKQKFSVL THCNTGSLAT AGYGTALGVI RALHSAGVLE RVYCTETRPF NQGSRLTAFE LVHEKLSGTL
101: ISNSAAAAIN ESRTCDTANK IGTDSVALSA KFHNVPFYVA APLTSNDLSL SSGQEIVIEE SCILFSNHFM FFEQGVVTKT TAGGAFDIKA FVQKTG

Best Arabidopsis Sequence Match ( AT2G05830.2 )
(BLAST)

001: MVVRGAPAIA IAAALSLAVE VFNFHGFDGS ASDAVAFLEN KLDYLVSSRP TAVNLADAAL KLKHVIAKAL ATATEAKSIF KAYIEASEDM LEDDVVSNKA
101: IGNFGLSLLR QQAKNPDKLS VLTHCNTGSL ATAGYGTALG VIRALHTQGI LERAYCTETR PFNQGSRLTA FELVHEKIPA TLIADSAAAA LMKDGRVDGV
201: IVGADRVASN GDTANKIGTY SLALCAKHHG IPFYVAAPLT SVDLSLSSGK EIVIEERSPK ELMHTHGGLG ERIAAPGISV WNPAFDMTPA ELIAGIITEK
301: GVITKNGNDT FDISSFAKKI TGNSSR

Arabidopsis Description

Methylthioribose-1-phosphate isomerase [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG4]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.